Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| major facilitator superfamily protein | SAMN05421747_101148 | Not Available | Positive | 185424 - 187091 | 60754.7 |
| d-psicose/d-tagatose/l-ribulose 3-epimerase | SAMN05421747_101149 | Not Available | Positive | 187111 - 187971 | 31233.2 |
| predicted dehydrogenase | SAMN05421747_101150 | Not Available | Positive | 188017 - 189147 | 42531.4 |
| putative membrane-bound dehydrogenase domain-containing protein | SAMN05421747_101151 | Not Available | Positive | 189228 - 192743 | 130129.0 |
| aldose 1-epimerase | SAMN05421747_101152 | Not Available | Positive | 192889 - 194037 | 41446.5 |
| sugar phosphate isomerase/epimerase | SAMN05421747_101153 | Not Available | Negative | 194115 - 195050 | 34237.4 |
| solute:na+ symporter, sss family | SAMN05421747_101154 | Not Available | Negative | 195134 - 196888 | 63816.8 |
| l-arabinose isomerase | SAMN05421747_101155 | Not Available | Negative | 196913 - 198412 | 55906.6 |
| l-ribulose-5-phosphate 4-epimerase | SAMN05421747_101156 | Not Available | Negative | 198448 - 199155 | 26052.9 |
| l-ribulokinase | SAMN05421747_101157 | Not Available | Negative | 199148 - 200818 | 60459.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
