Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-rhamnosidase n-terminal domain-containing protein | SAMN05421747_10591 | Not Available | Negative | 1817869 - 1820649 | 103257.0 |
| dna-binding transcriptional regulator, iclr family | SAMN05421747_10592 | Not Available | Positive | 1820819 - 1821598 | 28699.8 |
| polygalacturonase | SAMN05421747_10593 | Not Available | Negative | 1821591 - 1823129 | 55131.5 |
| sugar phosphate isomerase/epimerase | SAMN05421747_10594 | Not Available | Negative | 1823122 - 1824018 | 32635.3 |
| alpha-l-rhamnosidase | SAMN05421747_10595 | Not Available | Negative | 1824030 - 1825193 | 42678.7 |
| alpha-l-rhamnosidase | SAMN05421747_10596 | Not Available | Negative | 1825205 - 1827964 | 104423.0 |
| bnr repeat-like domain-containing protein | SAMN05421747_10597 | Not Available | Negative | 1827961 - 1829814 | 69257.6 |
| glycosyl hydrolases family 43 | SAMN05421747_10598 | Not Available | Negative | 1829811 - 1830767 | 36252.8 |
| hypothetical protein | SAMN05421747_10599 | Not Available | Negative | 1830746 - 1833871 | 115179.0 |
| pectate lyase | SAMN05421747_105100 | Not Available | Negative | 1833888 - 1835498 | 58573.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
