Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05421747_10581 | Not Available | Negative | 1795960 - 1798491 | 94923.0 |
| beta galactosidase small chain | SAMN05421747_10582 | Not Available | Negative | 1798460 - 1801267 | 106041.0 |
| putative collagen-binding domain of a collagenase | SAMN05421747_10583 | Not Available | Negative | 1801271 - 1802614 | 50158.6 |
| hypothetical protein | SAMN05421747_10584 | Not Available | Negative | 1802660 - 1805416 | 103021.0 |
| hypothetical protein | SAMN05421747_10585 | Not Available | Negative | 1805428 - 1807155 | 63354.6 |
| starch-binding associating with outer membrane | SAMN05421747_10586 | Not Available | Negative | 1807157 - 1809043 | 71481.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_10587 | Not Available | Negative | 1809087 - 1812182 | 113379.0 |
| hypothetical protein | SAMN05421747_10588 | Not Available | Negative | 1812247 - 1814289 | 75623.8 |
| beta-galactosidase | SAMN05421747_10589 | Not Available | Negative | 1814314 - 1816767 | 91551.6 |
| hypothetical protein | SAMN05421747_10590 | Not Available | Negative | 1816754 - 1817872 | 42369.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
