Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_10561 | Not Available | Negative | 1766308 - 1766790 | 18392.0 |
| lysyl-trna synthetase, class 2 | SAMN05421747_10562 | Not Available | Positive | 1767105 - 1768823 | 65328.4 |
| cysteine desulfuration protein sufe | SAMN05421747_10563 | Not Available | Negative | 1768829 - 1769251 | 15950.4 |
| cysteine desulfurase / selenocysteine lyase | SAMN05421747_10564 | Not Available | Negative | 1769306 - 1770547 | 45314.7 |
| peptidase family m28 | SAMN05421747_10565 | Not Available | Positive | 1770713 - 1772326 | 59709.9 |
| glutamate synthase domain-containing protein 2 | SAMN05421747_10566 | Not Available | Negative | 1772360 - 1774003 | 60211.1 |
| cephalosporin-c deacetylase | SAMN05421747_10567 | Not Available | Negative | 1774057 - 1775364 | 48636.2 |
| putative membrane-bound dehydrogenase domain-containing protein | SAMN05421747_10568 | Not Available | Negative | 1775399 - 1778836 | 126977.0 |
| hypothetical protein | SAMN05421747_10569 | Not Available | Negative | 1778888 - 1781221 | 88573.1 |
| glycosyl hydrolases family 2, sugar binding domain | SAMN05421747_10570 | Not Available | Negative | 1781221 - 1784679 | 128422.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
