Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amidophosphoribosyltransferase | SAMN05421747_10541 | Not Available | Negative | 1741597 - 1743507 | 72592.5 |
| ammonium transporter, amt family | SAMN05421747_10542 | Not Available | Negative | 1743733 - 1745043 | 46053.9 |
| dna polymerase-3 subunit alpha | SAMN05421747_10543 | Not Available | Positive | 1745409 - 1749836 | 166279.0 |
| thioredoxin 1 | SAMN05421747_10544 | Not Available | Positive | 1750042 - 1750359 | 11624.2 |
| hypothetical protein | SAMN05421747_10545 | Not Available | Positive | 1750485 - 1751540 | 39875.4 |
| rna polymerase sigma-54 factor | SAMN05421747_10546 | Not Available | Positive | 1751646 - 1753121 | 56563.1 |
| hypothetical protein | SAMN05421747_10547 | Not Available | Positive | 1753181 - 1754050 | 31211.8 |
| carboxypepd_reg-like domain-containing protein | SAMN05421747_10548 | Not Available | Negative | 1754162 - 1754641 | 16663.9 |
| n-carbamoylputrescine amidase | SAMN05421747_10549 | Not Available | Positive | 1754777 - 1755622 | 31515.0 |
| agmatine deiminase | SAMN05421747_10550 | Not Available | Positive | 1755686 - 1756732 | 38892.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
