Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05421747_104205 | Not Available | Positive | 1674248 - 1674631 | 13985.9 |
| aspartate aminotransferase | SAMN05421747_104206 | Not Available | Positive | 1674738 - 1675937 | 44151.8 |
| cytidylate kinase | SAMN05421747_104207 | Not Available | Negative | 1675962 - 1676624 | 24964.7 |
| hypothetical protein | SAMN05421747_104208 | Not Available | Negative | 1676629 - 1677042 | 15579.8 |
| dna topoisomerase-1 | SAMN05421747_104209 | Not Available | Negative | 1677049 - 1679373 | 87941.5 |
| 4-hydroxybenzoate polyprenyltransferase | SAMN05421747_104210 | Not Available | Negative | 1679425 - 1680273 | 31299.2 |
| gtp-binding protein | SAMN05421747_104211 | Not Available | Negative | 1680277 - 1680915 | 24283.2 |
| beta-aspartyl-peptidase (threonine type) | SAMN05421747_104212 | Not Available | Positive | 1681019 - 1682062 | 36300.2 |
| lipoprotein spr | SAMN05421747_104213 | Not Available | Positive | 1682073 - 1682663 | 22186.8 |
| thiol-disulfide isomerase or thioredoxin | SAMN05421747_104214 | Not Available | Positive | 1682802 - 1683299 | 18828.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
