Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna mismatch repair protein muts2 | SAMN05421747_104185 | Not Available | Negative | 1647941 - 1650319 | 88995.4 |
| protein of unknown function | SAMN05421747_104186 | Not Available | Negative | 1650323 - 1651000 | 25758.3 |
| hypothetical protein | SAMN05421747_104187 | Not Available | Positive | 1651124 - 1651789 | 25078.5 |
| acetyltransferase (gnat) family protein | SAMN05421747_104188 | Not Available | Positive | 1651798 - 1652256 | 17292.8 |
| protein of unknown function | SAMN05421747_104189 | Not Available | Positive | 1652277 - 1653074 | 30472.5 |
| aspartate kinase | SAMN05421747_104190 | Not Available | Positive | 1653088 - 1654356 | 47264.4 |
| ahpc/tsa family protein | SAMN05421747_104191 | Not Available | Positive | 1654380 - 1654961 | 21447.3 |
| glyceraldehyde 3-phosphate dehydrogenase | SAMN05421747_104192 | Not Available | Positive | 1655258 - 1656262 | 35782.8 |
| large subunit ribosomal protein l20 | SAMN05421747_104193 | Not Available | Negative | 1656367 - 1656711 | 12992.0 |
| large subunit ribosomal protein l35 | SAMN05421747_104194 | Not Available | Negative | 1656791 - 1656991 | 7349.25 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
