Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape determining protein roda | SAMN05421747_104175 | Not Available | Positive | 1633064 - 1634335 | 47285.9 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | SAMN05421747_104176 | Not Available | Negative | 1634511 - 1635044 | 19610.7 |
| protein of unknown function | SAMN05421747_104177 | Not Available | Negative | 1635035 - 1635838 | 29906.3 |
| exodeoxyribonuclease-5 | SAMN05421747_104178 | Not Available | Positive | 1635899 - 1637323 | 53808.4 |
| amino acid transporter | SAMN05421747_104179 | Not Available | Positive | 1637433 - 1638842 | 49882.9 |
| methyltransferase domain-containing protein | SAMN05421747_104180 | Not Available | Positive | 1638864 - 1639460 | 21969.6 |
| k(+)-stimulated pyrophosphate-energized sodium pump | SAMN05421747_104181 | Not Available | Positive | 1639701 - 1641947 | 77240.4 |
| basic amino acid/polyamine antiporter, apa family | SAMN05421747_104182 | Not Available | Positive | 1642119 - 1643606 | 53095.9 |
| tonb-dependent receptor plug domain | SAMN05421747_104183 | Not Available | Negative | 1643866 - 1647087 | 118342.0 |
| putative mg2+ transporter-c (mgtc) family protein | SAMN05421747_104184 | Not Available | Negative | 1647258 - 1647902 | 23623.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
