Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferredoxin, 2fe-2s | SAMN05421747_104165 | Not Available | Positive | 1619371 - 1619697 | 11628.1 |
| nadh dehydrogenase | SAMN05421747_104166 | Not Available | Positive | 1619759 - 1621075 | 49042.7 |
| dna polymerase (family 10) | SAMN05421747_104167 | Not Available | Positive | 1621097 - 1622782 | 62382.6 |
| peptidase family m1 | SAMN05421747_104168 | Not Available | Positive | 1622908 - 1624569 | 63478.4 |
| protein of unknown function | SAMN05421747_104169 | Not Available | Negative | 1624578 - 1626476 | 71537.6 |
| protein of unknown function | SAMN05421747_104170 | Not Available | Negative | 1626473 - 1628458 | 75449.1 |
| rod shape-determining protein mreb | SAMN05421747_104171 | Not Available | Positive | 1628585 - 1629607 | 37015.2 |
| rod shape-determining protein mrec | SAMN05421747_104172 | Not Available | Positive | 1629731 - 1630564 | 31115.0 |
| hypothetical protein | SAMN05421747_104173 | Not Available | Positive | 1630548 - 1631072 | 20456.9 |
| penicillin-binding protein 2 | SAMN05421747_104174 | Not Available | Positive | 1631104 - 1633071 | 73047.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
