Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-lysine 6-transaminase | SAMN05421747_104155 | Not Available | Positive | 1603176 - 1604507 | 49809.5 |
| imp dehydrogenase | SAMN05421747_104156 | Not Available | Negative | 1604667 - 1606142 | 52194.3 |
| hypothetical protein | SAMN05421747_104157 | Not Available | Positive | 1606344 - 1606805 | 16761.2 |
| secd/secf fusion protein | SAMN05421747_104158 | Not Available | Positive | 1606962 - 1609982 | 108932.0 |
| asp/glu/hydantoin racemase | SAMN05421747_104159 | Not Available | Positive | 1610159 - 1611655 | 55570.4 |
| acyl-homoserine lactone (ahl) acylase pvdq | SAMN05421747_104160 | Not Available | Positive | 1611661 - 1614990 | 124234.0 |
| dicarboxylate/amino acid:cation (na+ or h+) symporter, daacs family | SAMN05421747_104161 | Not Available | Positive | 1615123 - 1616433 | 46618.5 |
| na+/h+-dicarboxylate symporter | SAMN05421747_104162 | Not Available | Negative | 1616430 - 1617716 | 45555.3 |
| dna-binding transcriptional regulator, marr family | SAMN05421747_104163 | Not Available | Positive | 1617769 - 1618314 | 21383.1 |
| thioredoxin reductase (nadph) | SAMN05421747_104164 | Not Available | Positive | 1618328 - 1619359 | 37362.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
