Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-amino-acid dehydrogenase | SAMN05421747_101129 | Not Available | Negative | 154259 - 155509 | 45221.9 |
| 4-hydroxyproline epimerase | SAMN05421747_101130 | Not Available | Negative | 155528 - 156535 | 36467.8 |
| nadp-dependent aldehyde dehydrogenase | SAMN05421747_101131 | Not Available | Negative | 156532 - 158013 | 51993.2 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN05421747_101132 | Not Available | Negative | 158010 - 158960 | 35127.5 |
| arac-type dna-binding protein | SAMN05421747_101133 | Not Available | Negative | 159129 - 160004 | 33305.2 |
| protein of unknown function | SAMN05421747_101134 | Not Available | Positive | 160303 - 162096 | 69080.6 |
| basic amino acid/polyamine antiporter, apa family | SAMN05421747_101135 | Not Available | Positive | 162138 - 163538 | 50424.8 |
| prolyl oligopeptidase family protein | SAMN05421747_101136 | Not Available | Positive | 163556 - 165853 | 85915.0 |
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | Positive | 165650 - 165714 | 18.01 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_101137 | Not Available | Positive | 166186 - 169356 | 117452.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
