Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator, mexjk operon transcriptional repressor | SAMN05421747_10435 | Not Available | Positive | 1466179 - 1466772 | 22612.6 |
| outer membrane protein tolc | SAMN05421747_10436 | Not Available | Positive | 1466806 - 1468161 | 50837.6 |
| rnd family efflux transporter, mfp subunit | SAMN05421747_10437 | Not Available | Positive | 1468181 - 1469242 | 38011.7 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN05421747_10438 | Not Available | Positive | 1469267 - 1472440 | 115758.0 |
| valyl-trna synthetase | SAMN05421747_10439 | Not Available | Negative | 1472479 - 1475100 | 100668.0 |
| eama-like transporter family protein | SAMN05421747_10440 | Not Available | Positive | 1475205 - 1476065 | 31503.6 |
| morn repeat-containing protein | SAMN05421747_10441 | Not Available | Negative | 1476095 - 1476991 | 33604.5 |
| protein of unknown function | SAMN05421747_10442 | Not Available | Negative | 1477039 - 1477866 | 32139.6 |
| hypothetical protein | SAMN05421747_10443 | Not Available | Negative | 1477868 - 1479907 | 79054.7 |
| hypothetical protein | SAMN05421747_10444 | Not Available | Positive | 1480078 - 1480251 | 6561.22 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
