Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetylmuramyl pentapeptide phosphotransferase/udp-n-acetylglucosamine-1-phosphate transferase | SAMN05421747_103176 | Not Available | Negative | 1341673 - 1342851 | 43416.6 |
| ytxh-like protein | SAMN05421747_103177 | Not Available | Positive | 1343092 - 1343361 | 9604.5 |
| putative holin-x, holin superfamily iii | SAMN05421747_103178 | Not Available | Positive | 1343489 - 1343872 | 14584.9 |
| hypothetical protein | SAMN05421747_103179 | Not Available | Positive | 1343850 - 1344314 | 17731.7 |
| gdp-l-fucose synthase | SAMN05421747_103180 | Not Available | Negative | 1344308 - 1345318 | 37458.0 |
| trna (guanine-n7-)-methyltransferase | SAMN05421747_103181 | Not Available | Positive | 1345371 - 1346024 | 24721.8 |
| upf0176 protein | SAMN05421747_103182 | Not Available | Negative | 1345993 - 1347060 | 39932.8 |
| protein of unknown function | SAMN05421747_103183 | Not Available | Negative | 1347096 - 1349729 | 99480.3 |
| susd family protein | SAMN05421747_103184 | Not Available | Negative | 1349751 - 1351094 | 49559.8 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_103185 | Not Available | Negative | 1351108 - 1354596 | 127865.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
