Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-d-xyloside xylohydrolase | SAMN05421747_103146 | Not Available | Positive | 1303967 - 1306819 | 109325.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_103147 | Not Available | Positive | 1306889 - 1310026 | 115047.0 |
| starch-binding associating with outer membrane | SAMN05421747_103148 | Not Available | Positive | 1310045 - 1311664 | 59861.3 |
| hypothetical protein | SAMN05421747_103149 | Not Available | Positive | 1311684 - 1313633 | 71792.4 |
| endoglucanase | SAMN05421747_103150 | Not Available | Positive | 1313617 - 1315362 | 64047.2 |
| protein of unknown function | SAMN05421747_103151 | Not Available | Positive | 1315456 - 1315929 | 17801.6 |
| hypothetical protein | SAMN05421747_103152 | Not Available | Negative | 1315934 - 1316470 | 20587.8 |
| uracil-dna glycosylase | SAMN05421747_103153 | Not Available | Positive | 1316581 - 1317252 | 25214.3 |
| lrp/asnc family transcriptional regulator, leucine-responsive regulatory protein | SAMN05421747_103154 | Not Available | Negative | 1317255 - 1317725 | 17794.9 |
| fe-s cluster assembly protein sufb | SAMN05421747_103155 | Not Available | Positive | 1318009 - 1319460 | 53763.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
