Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | SAMN05421747_103136 | Not Available | Negative | 1288004 - 1288888 | 33202.5 |
| protein of unknown function | SAMN05421747_103137 | Not Available | Negative | 1288890 - 1289876 | 37418.1 |
| hypothetical protein | SAMN05421747_103138 | Not Available | Negative | 1289913 - 1290662 | 28124.4 |
| flagellum-specific peptidoglycan hydrolase flgj | SAMN05421747_103139 | Not Available | Negative | 1290720 - 1291571 | 32009.0 |
| flagellum-specific peptidoglycan hydrolase flgj | SAMN05421747_103140 | Not Available | Negative | 1291572 - 1292201 | 23390.8 |
| predicted o-methyltransferase yrrm | SAMN05421747_103141 | Not Available | Negative | 1292248 - 1292898 | 24153.2 |
| gtp-binding protein | SAMN05421747_103142 | Not Available | Positive | 1292919 - 1294799 | 70273.0 |
| starch-binding associating with outer membrane | SAMN05421747_103143 | Not Available | Negative | 1294816 - 1296282 | 54609.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_103144 | Not Available | Negative | 1296305 - 1299502 | 116432.0 |
| signal transduction histidine kinase | SAMN05421747_103145 | Not Available | Positive | 1299761 - 1303789 | 152107.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
