Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| na+/h+-dicarboxylate symporter | SAMN05421747_10199 | Not Available | Positive | 118132 - 119397 | 44723.8 |
| ribosome-associated protein | SAMN05421747_101100 | Not Available | Positive | 119375 - 119794 | 15853.2 |
| hypothetical protein | SAMN05421747_101101 | Not Available | Negative | 119791 - 120777 | 37843.1 |
| cytochrome c-type biogenesis protein ccme | SAMN05421747_101102 | Not Available | Positive | 120910 - 121413 | 18998.8 |
| cytochrome c-type biogenesis protein ccmf | SAMN05421747_101103 | Not Available | Positive | 121415 - 123865 | 91857.8 |
| predicted oxidoreductase, contains short-chain dehydrogenase (sdr) and duf2520 domains | SAMN05421747_101104 | Not Available | Positive | 123865 - 124626 | 27342.9 |
| hypothetical protein | SAMN05421747_101105 | Not Available | Negative | 124634 - 125233 | 23509.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421747_101106 | Not Available | Negative | 125220 - 125717 | 19500.1 |
| hypothetical protein | SAMN05421747_101107 | Not Available | Positive | 125780 - 126220 | 16667.9 |
| predicted amidohydrolase | SAMN05421747_101108 | Not Available | Negative | 126233 - 127024 | 30654.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
