Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna c967 or c1407 c5-methylase, rsmb/rsmf family | SAMN05421747_103106 | Not Available | Negative | 1255962 - 1257323 | 50416.3 |
| hypothetical protein | SAMN05421747_103107 | Not Available | Positive | 1257416 - 1257832 | 16155.0 |
| alpha-l-fucosidase | SAMN05421747_103108 | Not Available | Positive | 1257981 - 1259360 | 52260.8 |
| acylphosphatase | SAMN05421747_103109 | Not Available | Positive | 1259365 - 1259655 | 10938.9 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN05421747_103110 | Not Available | Positive | 1259673 - 1261172 | 55822.4 |
| putative tim-barrel protein, nifr3 family | SAMN05421747_103111 | Not Available | Negative | 1261169 - 1262164 | 37643.2 |
| arginase family enzyme | SAMN05421747_103112 | Not Available | Negative | 1262216 - 1263397 | 44741.9 |
| nucleoside-diphosphate-sugar epimerase | SAMN05421747_103113 | Not Available | Positive | 1263399 - 1264442 | 37900.0 |
| d-3-phosphoglycerate dehydrogenase | SAMN05421747_103114 | Not Available | Positive | 1264444 - 1265736 | 49404.4 |
| 5-formyltetrahydrofolate cyclo-ligase | SAMN05421747_103115 | Not Available | Negative | 1265720 - 1266319 | 22448.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
