Parapedobacter composti

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Parapedobacter

Description

Parapedobacter composti is a Gram-negative, rod-shaped bacterium that has been characterized as non-spore-forming and demonstrates aerobic metabolic capabilities. Optimal growth conditions for this organism occur at a temperature of approximately 29.0°C, suggesting a preference for mesophilic environments. The Gram-negative nature of P. composti indicates the presence of a double membrane structure, which may play a crucial role in its interactions with the surrounding environment and influence its nutrient uptake mechanisms. The non-spore-forming trait of P. composti suggests a reliance on favorable environmental conditions for survival rather than the ability to withstand extreme stresses typically associated with sporulation. This characteristic may influence its ecological niches, as it may be less resilient to harsh conditions compared to spore-forming bacteria. Given its aerobic requirement, P. composti likely plays a role in biogeochemical processes where oxygen is available, potentially contributing to organic matter decomposition and nutrient cycling in its habitat. The specific temperature preference may position this microbe within certain ecological frameworks, such as composting systems or organic-rich environments where temperatures remain stable. The ability of P. composti to thrive in mesophilic and oxygen-rich conditions highlights its potential significance in microbial communities involved in organic matter degradation and nutrient recycling, emphasizing the interconnectedness of microbial life and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusParapedobacter
SpeciesParapedobacter composti
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Parapedobacter composti strain DSM 22900 genome assembly, contig:

Gene Summary

Adenine Count

1152102 bp

Thymine Count

1157457 bp

Guanine Count

1159480 bp

Cytosine Count

1152985 bp

Genome Length

4622024 bp

Protein-coding Genes

3993 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphosulfolactate synthaseSAMN05421747_10366Not AvailablePositive1212120 - 121287528443.1
shikimate dehydrogenaseSAMN05421747_10367Not AvailablePositive1212878 - 121362727744.4
gliding motility-associated lipoprotein glddSAMN05421747_10368Not AvailablePositive1213627 - 121421122399.8
glyoxylase, beta-lactamase superfamily iiSAMN05421747_10369Not AvailablePositive1214265 - 121490623431.8
lipoprotein-releasing system permease proteinSAMN05421747_10370Not AvailablePositive1214910 - 121613045283.5
hypothetical proteinSAMN05421747_10371Not AvailableNegative1216152 - 121679923829.5
fe-s cluster biogenesis protein nfua, 4fe-4s-binding domainSAMN05421747_10372Not AvailableNegative1216853 - 121713110031.2
zinc carboxypeptidaseSAMN05421747_10373Not AvailableNegative1217230 - 121977693828.0
outer membrane protein assembly factor bamdSAMN05421747_10374Not AvailablePositive1219918 - 122082035342.6
rna polymerase rpb6SAMN05421747_10375Not AvailablePositive1220840 - 122117512873.1

Displaying genes 1041 – 1050 of 4040 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.