Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Parapedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Parapedobacter |
| Species | Parapedobacter composti |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1152102 bp
Thymine Count
1157457 bp
Guanine Count
1159480 bp
Cytosine Count
1152985 bp
Genome Length
4622024 bp
Protein-coding Genes
3993 genes
Non-Coding Genes
47 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN05421747_10356 | Not Available | Negative | 1193276 - 1195003 | 65787.5 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421747_10357 | Not Available | Negative | 1195033 - 1198155 | 116330.0 |
| hypothetical protein | SAMN05421747_10358 | Not Available | Negative | 1198270 - 1199874 | 57825.5 |
| glycosyl hydrolase family 88 | SAMN05421747_10359 | Not Available | Positive | 1200422 - 1201600 | 45104.8 |
| two component regulator propeller | SAMN05421747_10360 | Not Available | Positive | 1201721 - 1205794 | 154704.0 |
| 2-deoxy-d-gluconate 3-dehydrogenase | SAMN05421747_10361 | Not Available | Negative | 1205827 - 1206597 | 27544.7 |
| protein of unknown function | SAMN05421747_10362 | Not Available | Negative | 1206614 - 1207741 | 41574.5 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | SAMN05421747_10363 | Not Available | Negative | 1207761 - 1208603 | 31368.2 |
| aldehyde dehydrogenase (nad+) | SAMN05421747_10364 | Not Available | Negative | 1208792 - 1210366 | 56242.2 |
| tetratricopeptide repeat-containing protein | SAMN05421747_10365 | Not Available | Positive | 1210650 - 1212053 | 54457.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
