Tolumonas auensis DSM 9187

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Aeromonadales

Family

Aeromonadaceae

Genus

Tolumonas

Description

Tolumonas auensis (strain DSM 9187 / TA4) is a toluene-producing nonmotile Gram-negative bacterium isolated from anoxic sediments of a freshwater lake. Toluene is produced from phenylalanine, phenylpyruvate, phenyllactate, and phenylacetate, and phenol is produced from tyrosine. Both the presence of a carbon source and the presence of a toluene precursor are essential for initiation of toluene production. Toluene is accumulated during the course of the year in the hypolimnion of a eutrophic lake, and accumulation begins as soon as stratification of the water occurs and anoxic conditions are established. The optimum temperature and pH for growth are 22 degrees Celsius and pH 7.2, respectively. Bacterial growth occurs under oxic and anoxic conditions. Acetate, ethanol, and formate are the major fermentation products of the bacterium when it grows on glucose. The major lipoquinones are ubiquinone 8 and menaquinone 8 under both oxic and anoxic growth conditions. (Adaptated from 8573493). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAeromonadales
FamilyAeromonadaceae
GenusTolumonas
SpeciesTolumonas auensis
StrainDSM 9187

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Tolumonas auensis DSM 9187
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature22
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Tolumonas auensis DSM 9187, complete sequence.

Gene Summary

Adenine Count

884355 bp

Thymine Count

885066 bp

Guanine Count

848610 bp

Cytosine Count

853261 bp

Genome Length

3471292 bp

Protein-coding Genes

3126 genes

Non-Coding Genes

150 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l,d-transpeptidase family proteinTOLA_RS00315P0AAY0Negative72691 - 7361433723.7
exodeoxyribonuclease v subunit gammaTOLA_RS00320P07648Positive73906 - 77298128654.0
exodeoxyribonuclease v subunit betaTOLA_RS00325P08394Positive77295 - 80822131553.0
exodeoxyribonuclease v subunit alphaTOLA_RS00330P04993Positive80819 - 8271769535.6
methylenetetrahydrofolate reductaseTOLA_RS00335P11003Positive82880 - 8377333150.5
plp-dependent aminotransferase family proteinTOLA_RS00340H3ZPL1Negative83843 - 8499743188.8
marr family winged helix-turn-helix transcriptional regulatorTOLA_RS00345Not AvailablePositive85130 - 8562718515.9
dead/deah box helicaseTOLA_RS00350Not AvailableNegative85677 - 8714653184.3
atp-dependent rna helicase dbpaTOLA_RS00355P21693Negative87219 - 8862851224.9
deor/glpr family transcriptional regulatorTOLA_RS00360P0ACL0Positive88973 - 8973428167.8

Displaying genes 121 – 130 of 3276 in total

Metabolites

2038 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 2038 metabolites

Health Effects

No health effects information available for this bacterium.