Agromyces atrinae str. DSM 23870

rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Agromyces

Description

Agromyces atrinae strain DSM 23870 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at a temperature of 29.0°C. This microbe belongs to the genus Agromyces, which is known for its diverse ecological roles and ability to thrive in various environments. The Gram-positive nature of A. atrinae indicates the presence of a thick peptidoglycan layer in its cell wall, a feature that may confer advantages in specific environmental conditions, including resistance to certain external stressors. The rod shape of this organism is typical among many members of the Actinobacteria phylum, suggesting a potential for filamentous growth under certain circumstances, although such growth has not been specifically documented for this strain. As an aerobic organism, A. atrinae relies on oxygen for its metabolic processes, which may influence its ecological niche, likely favoring environments where oxygen is readily available. The optimal growth temperature of 29.0°C suggests a preference for moderate temperatures, potentially aligning with habitats such as soil or decomposing organic matter, where microbial activity is prevalent. Overall, Agromyces atrinae str. DSM 23870 exemplifies the functional diversity within the Agromyces genus, and its traits may contribute to its role in nutrient cycling, particularly in warm, oxygen-rich environments. Further studies could elucidate its specific ecological functions and interactions within microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusAgromyces
SpeciesAgromyces atrinae
StrainDSM 23870

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agromyces atrinae strain DSM 23870 Scaffold23, whole genome

Gene Summary

Adenine Count

593037 bp

Thymine Count

598634 bp

Guanine Count

1335443 bp

Cytosine Count

1329680 bp

Genome Length

3858615 bp

Protein-coding Genes

3458 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
molecular chaperone dnakESP50_01245Not AvailableNegative293350 - 29520966653.9
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive295359 - 295726Not Available
membrane protein insertase yidcESP50_01250Not AvailableNegative295364 - 29608625501.0
hypothetical proteinESP50_01255Not AvailableNegative296222 - 2965219617.84
hypothetical proteinESP50_01260Not AvailablePositive296628 - 29720620039.9
xre family transcriptional regulatorESP50_01265Not AvailableNegative297181 - 29779821976.2
nad(p)/fad-dependent oxidoreductaseESP50_01270Not AvailablePositive297841 - 29879432275.5
mfs transporterESP50_01275Not AvailablePositive298804 - 30018648746.1
marr family transcriptional regulatorESP50_01280Not AvailableNegative300191 - 30069417725.6
hypothetical proteinESP50_01285Not AvailablePositive300961 - 30176729268.9

Displaying genes 251 – 260 of 3511 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.