Agromyces atrinae str. DSM 23870

rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Agromyces

Description

Agromyces atrinae strain DSM 23870 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at a temperature of 29.0°C. This microbe belongs to the genus Agromyces, which is known for its diverse ecological roles and ability to thrive in various environments. The Gram-positive nature of A. atrinae indicates the presence of a thick peptidoglycan layer in its cell wall, a feature that may confer advantages in specific environmental conditions, including resistance to certain external stressors. The rod shape of this organism is typical among many members of the Actinobacteria phylum, suggesting a potential for filamentous growth under certain circumstances, although such growth has not been specifically documented for this strain. As an aerobic organism, A. atrinae relies on oxygen for its metabolic processes, which may influence its ecological niche, likely favoring environments where oxygen is readily available. The optimal growth temperature of 29.0°C suggests a preference for moderate temperatures, potentially aligning with habitats such as soil or decomposing organic matter, where microbial activity is prevalent. Overall, Agromyces atrinae str. DSM 23870 exemplifies the functional diversity within the Agromyces genus, and its traits may contribute to its role in nutrient cycling, particularly in warm, oxygen-rich environments. Further studies could elucidate its specific ecological functions and interactions within microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusAgromyces
SpeciesAgromyces atrinae
StrainDSM 23870

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agromyces atrinae strain DSM 23870 Scaffold23, whole genome

Gene Summary

Adenine Count

593037 bp

Thymine Count

598634 bp

Guanine Count

1335443 bp

Cytosine Count

1329680 bp

Genome Length

3858615 bp

Protein-coding Genes

3458 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
threonine--trna ligaseESP50_10635Not AvailablePositive2304932 - 230690273296.4
hit domain-containing proteinESP50_10640Not AvailablePositive2306956 - 230746218700.4
pyridoxal 5'-phosphate synthase lyase subunit pdxsESP50_10645Not AvailablePositive2307557 - 230845931830.3
pyridoxal 5'-phosphate synthase glutaminase subunit pdxtESP50_10650Not AvailablePositive2308456 - 230909121991.4
duf1697 domain-containing proteinESP50_10655Not AvailablePositive2309100 - 230960918565.2
yebc/pmpr family dna-binding transcriptional regulatorESP50_10660Not AvailablePositive2309669 - 231042726886.6
crossover junction endodeoxyribonuclease ruvcESP50_10665Not AvailablePositive2310435 - 231103420820.3
holliday junction branch migration protein ruvaESP50_10670Not AvailablePositive2311031 - 231164820820.3
holliday junction branch migration dna helicase ruvbESP50_10675Not AvailablePositive2311645 - 231268837268.0
preprotein translocase subunit yajcESP50_10680Not AvailablePositive2312765 - 231315414124.7

Displaying genes 2101 – 2110 of 3511 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.