Agromyces atrinae str. DSM 23870

rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Agromyces

Description

Agromyces atrinae strain DSM 23870 is a Gram-positive, rod-shaped bacterium characterized by its aerobic metabolism and optimal growth at a temperature of 29.0°C. This microbe belongs to the genus Agromyces, which is known for its diverse ecological roles and ability to thrive in various environments. The Gram-positive nature of A. atrinae indicates the presence of a thick peptidoglycan layer in its cell wall, a feature that may confer advantages in specific environmental conditions, including resistance to certain external stressors. The rod shape of this organism is typical among many members of the Actinobacteria phylum, suggesting a potential for filamentous growth under certain circumstances, although such growth has not been specifically documented for this strain. As an aerobic organism, A. atrinae relies on oxygen for its metabolic processes, which may influence its ecological niche, likely favoring environments where oxygen is readily available. The optimal growth temperature of 29.0°C suggests a preference for moderate temperatures, potentially aligning with habitats such as soil or decomposing organic matter, where microbial activity is prevalent. Overall, Agromyces atrinae str. DSM 23870 exemplifies the functional diversity within the Agromyces genus, and its traits may contribute to its role in nutrient cycling, particularly in warm, oxygen-rich environments. Further studies could elucidate its specific ecological functions and interactions within microbial communities.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusAgromyces
SpeciesAgromyces atrinae
StrainDSM 23870

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agromyces atrinae strain DSM 23870 Scaffold23, whole genome

Gene Summary

Adenine Count

593037 bp

Thymine Count

598634 bp

Guanine Count

1335443 bp

Cytosine Count

1329680 bp

Genome Length

3858615 bp

Protein-coding Genes

3458 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
abc transporter substrate-binding proteinESP50_07370Not AvailablePositive1599416 - 160103856898.9
carboxymuconolactone decarboxylase family proteinESP50_07375Not AvailablePositive1601041 - 160138212253.4
m20/m25/m40 family metallo-hydrolaseESP50_07380Not AvailablePositive1601379 - 160270747122.8
aminotransferase class v-fold plp-dependent enzymeESP50_07385Not AvailablePositive1602926 - 160424546206.8
gntr family transcriptional regulatorESP50_07390Not AvailablePositive1604446 - 160514125290.3
sugar phosphate isomerase/epimeraseESP50_07395Not AvailablePositive1605239 - 160618335154.3
fadr family transcriptional regulatorESP50_07400Not AvailableNegative1606199 - 160694226839.7
sugar abc transporter substrate-binding proteinESP50_07405Not AvailablePositive1607207 - 160849344798.6
sugar abc transporter permeaseESP50_07410Not AvailablePositive1608569 - 160954335455.5
carbohydrate abc transporter permeaseESP50_07415Not AvailablePositive1609540 - 161037029489.8

Displaying genes 1461 – 1470 of 3511 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.