Dickeya parazeae Ech586

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Dickeya

Description

Dickeya parazeae Ech586 is a Gram-negative, rod-shaped bacterium that exhibits a diverse cell arrangement, appearing in pairs, singles, and chains. This microbe is nonsporulating, indicating that it does not form spores as part of its life cycle. D. parazeae Ech586 is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. Its adaptability to various habitats suggests a versatile ecological role, potentially enabling it to inhabit diverse niches. The presence of D. parazeae Ech586 in multiple habitats points to its ecological flexibility, which may facilitate interactions with various environmental factors and other organisms. This adaptability may play a significant role in its survival and proliferation under fluctuating conditions. Understanding the traits of D. parazeae Ech586 can contribute to a broader comprehension of its ecological dynamics and interactions within its environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusDickeya
SpeciesDickeya parazeae
StrainEch586

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Dickeya parazeae Ech586
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs-Singles-Chains
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dickeya parazeae Ech586, complete sequence.

Gene Summary

Adenine Count

1117418 bp

Thymine Count

1116434 bp

Guanine Count

1292424 bp

Cytosine Count

1292118 bp

Genome Length

4818394 bp

Protein-coding Genes

4079 genes

Non-Coding Genes

213 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosome biogenesis factor yjgaDD586_RS01445Not AvailableNegative323866 - 32441420984.9
metalloprotease pmbaDD586_RS01450Not AvailablePositive324605 - 32594547917.0
nucleoside diphosphate kinase regulatorDD586_RS01455Not AvailableNegative326008 - 32641815178.1
pts phosphocarrier protein nprDD586_RS01460Not AvailableNegative326609 - 3268819927.83
rnase adapter rapzDD586_RS01465Not AvailableNegative326878 - 32773232551.2
pts iia-like nitrogen regulatory protein ptsnDD586_RS01470Not AvailableNegative327870 - 32836118085.0
ribosome hibernation promoting factorDD586_RS01475Not AvailableNegative328455 - 32874210939.2
rna polymerase factor sigma-54DD586_RS01480Not AvailableNegative328767 - 33020053734.5
lps export abc transporter atp-binding proteinDD586_RS01485Not AvailableNegative330249 - 33097426863.5
lipopolysaccharide abc transporter substrate-binding protein lptaDD586_RS01490Not AvailableNegative330990 - 33156820877.9

Displaying genes 431 – 440 of 4292 in total

Metabolites

1815 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1815 metabolites

Health Effects

No health effects information available for this bacterium.