Pseudomonas chlororaphis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis is a Gram-negative, rod-shaped bacterium commonly found in specific ecological niches, including the nodules of Chamaecytisus albus and the rhizosphere. This microbe is known for its beneficial interactions with plant roots, where it contributes to nutrient cycling and may enhance plant growth through various mechanisms. The habitat of Pseudomonas chlororaphis in the root nodules of legumes like Chamaecytisus albus suggests a role in symbiotic relationships, potentially aiding in nitrogen fixation processes. In addition to its presence in root nodules, its location in the rhizosphere indicates that it may engage in interactions with other soil microorganisms, thereby influencing the microbial community structure and function in this environment. Pseudomonas species, including Pseudomonas chlororaphis, are often recognized for their metabolic versatility and capability to produce various secondary metabolites. Such traits can have implications for plant health and soil dynamics, although specific metabolic pathways and interactions remain to be fully elucidated in this species. The unique ecological niche that Pseudomonas chlororaphis occupies highlights its potential role in sustainable agricultural practices, particularly in promoting plant health and enhancing soil fertility through its interactions with host plants and other microbial populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain TAMOak81 chromosome, complete

Gene Summary

Adenine Count

1243657 bp

Thymine Count

1239818 bp

Guanine Count

2108619 bp

Cytosine Count

2119266 bp

Genome Length

6711360 bp

Protein-coding Genes

5923 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysine n(6)-hydroxylase/l-ornithine n(5)-oxygenase family proteinC4K26_RS20020Not AvailableNegative4452403 - 445373749445.5
sigma-70 family rna polymerase sigma factorC4K26_RS20025Not AvailableNegative4453869 - 445435118595.4
efflux rnd transporter periplasmic adaptor subunitC4K26_RS20030Not AvailablePositive4454685 - 445585742178.4
macb family efflux pump subunitC4K26_RS20035Not AvailablePositive4455858 - 445783169782.4
efflux transporter outer membrane subunitC4K26_RS20040Not AvailablePositive4457839 - 445923349748.7
pvdj/pvdd/pvdp-like proteinC4K26_RS20045Not AvailableNegative4459437 - 446106261636.4
pyoverdine-tailoring dipeptidase-like protein pvdmC4K26_RS20050Not AvailablePositive4461281 - 446263049444.0
aminotransferase class v-fold plp-dependent enzymeC4K26_RS20055Not AvailablePositive4462662 - 446395448208.3
formylglycine-generating enzyme family proteinC4K26_RS20060Not AvailablePositive4463999 - 446489832494.2
n(5)-hydroxyornithine transformylase pvdfC4K26_RS20065Not AvailableNegative4465277 - 446610431224.9

Displaying genes 4001 – 4010 of 12586 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.