Pseudomonas chlororaphis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis is a Gram-negative, rod-shaped bacterium commonly found in specific ecological niches, including the nodules of Chamaecytisus albus and the rhizosphere. This microbe is known for its beneficial interactions with plant roots, where it contributes to nutrient cycling and may enhance plant growth through various mechanisms. The habitat of Pseudomonas chlororaphis in the root nodules of legumes like Chamaecytisus albus suggests a role in symbiotic relationships, potentially aiding in nitrogen fixation processes. In addition to its presence in root nodules, its location in the rhizosphere indicates that it may engage in interactions with other soil microorganisms, thereby influencing the microbial community structure and function in this environment. Pseudomonas species, including Pseudomonas chlororaphis, are often recognized for their metabolic versatility and capability to produce various secondary metabolites. Such traits can have implications for plant health and soil dynamics, although specific metabolic pathways and interactions remain to be fully elucidated in this species. The unique ecological niche that Pseudomonas chlororaphis occupies highlights its potential role in sustainable agricultural practices, particularly in promoting plant health and enhancing soil fertility through its interactions with host plants and other microbial populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain TAMOak81 chromosome, complete

Gene Summary

Adenine Count

1243657 bp

Thymine Count

1239818 bp

Guanine Count

2108619 bp

Cytosine Count

2119266 bp

Genome Length

6711360 bp

Protein-coding Genes

5923 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma-54-dependent fis family transcriptional regulatorC4K26_RS19000Not AvailablePositive4219067 - 422091768505.0
type ii toxin-antitoxin system phd/yefm family antitoxinC4K26_RS19005Not AvailablePositive4220943 - 422123610457.7
type ii toxin-antitoxin system vapc family toxinC4K26_RS19010Not AvailablePositive4221233 - 422161013966.1
cysteine--trna ligaseC4K26_RS19015Not AvailableNegative4221683 - 422306551484.2
glutamine--trna ligase/yqey domain fusion proteinC4K26_RS19020Not AvailableNegative4223084 - 422478164458.9
peptidylprolyl isomeraseC4K26_RS19025Not AvailablePositive4225059 - 422556218225.7
udp-2,3-diacylglucosamine diphosphataseC4K26_RS19030Not AvailablePositive4225559 - 422630528357.6
dha2 family efflux mfs transporter permease subunitC4K26_RS19035Not AvailableNegative4226427 - 422795655031.1
efflux rnd transporter periplasmic adaptor subunitC4K26_RS19040Not AvailableNegative4228022 - 422922442982.7
efflux transporter outer membrane subunitC4K26_RS19045Not AvailableNegative4229240 - 423070952108.2

Displaying genes 3801 – 3810 of 12586 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.