Pseudomonas chlororaphis

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas chlororaphis is a Gram-negative, rod-shaped bacterium commonly found in specific ecological niches, including the nodules of Chamaecytisus albus and the rhizosphere. This microbe is known for its beneficial interactions with plant roots, where it contributes to nutrient cycling and may enhance plant growth through various mechanisms. The habitat of Pseudomonas chlororaphis in the root nodules of legumes like Chamaecytisus albus suggests a role in symbiotic relationships, potentially aiding in nitrogen fixation processes. In addition to its presence in root nodules, its location in the rhizosphere indicates that it may engage in interactions with other soil microorganisms, thereby influencing the microbial community structure and function in this environment. Pseudomonas species, including Pseudomonas chlororaphis, are often recognized for their metabolic versatility and capability to produce various secondary metabolites. Such traits can have implications for plant health and soil dynamics, although specific metabolic pathways and interactions remain to be fully elucidated in this species. The unique ecological niche that Pseudomonas chlororaphis occupies highlights its potential role in sustainable agricultural practices, particularly in promoting plant health and enhancing soil fertility through its interactions with host plants and other microbial populations.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas chlororaphis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas chlororaphis
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatnodules of Chamaecytisus albus; rhizosphere; root nodules
Biotic relationshipNot Available
Host(s)Viridiplantae, Brassica napus var. napus, Persea americana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityAnimal

Genome Summary

Pseudomonas chlororaphis strain TAMOak81 chromosome, complete

Gene Summary

Adenine Count

1243657 bp

Thymine Count

1239818 bp

Guanine Count

2108619 bp

Cytosine Count

2119266 bp

Genome Length

6711360 bp

Protein-coding Genes

5923 genes

Non-Coding Genes

196 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type vi secretion system protein tssaC4K26_RS17795Not AvailablePositive3945594 - 394663136939.7
type vi secretion system contractile sheath small subunitC4K26_RS17800Not AvailablePositive3946677 - 394719218660.5
type vi secretion system contractile sheath large subunitC4K26_RS17805Not AvailablePositive3947208 - 394870155232.4
hcp family type vi secretion system effectorC4K26_RS17810Not AvailablePositive3948799 - 394928717407.7
type vi secretion system amidase effector protein tae4C4K26_RS17815Not AvailablePositive3949362 - 394979316243.9
hypothetical proteinC4K26_RS17820Not AvailablePositive3949790 - 395023316210.5
type vi secretion system baseplate subunit tsseC4K26_RS17825Not AvailablePositive3950344 - 395085918893.7
type vi secretion system baseplate subunit tssfC4K26_RS17830Not AvailablePositive3950856 - 395271569214.6
type vi secretion system baseplate subunit tssgC4K26_RS17835Not AvailablePositive3952679 - 395372839382.6
type vi secretion system atpase tsshC4K26_RS17840Not AvailablePositive3953725 - 395644899046.0

Displaying genes 3561 – 3570 of 12586 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.