Escherichia coli ED1a

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli ED1a is a gram-negative, rod-shaped bacterium that thrives in moderate temperatures as a mesophile. As a chemoheterotroph, it derives energy from organic compounds, utilizing various carbon sources for growth. This strain of E. coli is primarily found in the intestines of warm-blooded organisms, including humans, where it plays a significant role in digestion and nutrient absorption.As a facultative anaerobe, E. coli ED1a can grow in both aerobic and anaerobic environments, allowing it to adapt to fluctuating oxygen levels within the gastrointestinal tract. This flexibility enables it to thrive in diverse environments, whether oxygen-rich or lacking in this critical gas. The gram-negative characteristic of E. coli ED1a is notable, as the bacterium possesses a thin peptidoglycan layer and an outer membrane rich in lipopolysaccharides, which can influence its pathogenesis and resistance to antibiotics. E. coli ED1a is of particular interest in microbiological research due to its role as a model organism in genetics and molecular biology. It has been instrumental in advancing our understanding of cellular processes and genetic engineering techniques, making it a cornerstone in biotechnology and pharmaceutical development. Furthermore, certain strains of E. coli, including ED1a, are being studied for their potential benefits in probiotic formulations, highlighting their significance in promoting gut health. Notably, E. coli also plays a pivotal role in the nitrogen cycle, contributing to soil fertility and ecosystem balance through its metabolic activities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainED1a

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli ED1a
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Escherichia coli ED1a


Gene Summary

Adenine Count

1284417 bp

Thymine Count

1282079 bp

Guanine Count

1314936 bp

Cytosine Count

1328016 bp

Genome Length

5209548 bp

Protein-coding Genes

4552 genes

Non-Coding Genes

685 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+896606 - 896617Not Available
Gp201ECED1_RS04360Not Available+900535 - 904602149794.0
outer membrane lipoprotein chaperone lolaECED1_RS04365Not Available+904761 - 90537222498.2
Gp70ECED1_RS04370Not Available+905383 - 90672649628.8
Gp287ECED1_RS04375Not Available+906817 - 90810948416.8
Hok/gef family proteinECED1_RS04380Not Available-908350 - 9084905249.7
Hypothetical proteinECED1_RS04385Not Available-908822 - 9089625457.03
Ogr/delta-like zinc finger family proteinECED1_RS04390Not Available-909097 - 90939911381.6
Gene d proteinECED1_RS04395Not Available-909444 - 91056841647.4
Tail sheath monomerECED1_RS04400Not Available+910723 - 91191043116.1

Displaying genes 1 – 10 of 5237 in total

Metabolites

2005 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 2005 metabolites