Escherichia coli O103:H2 str. 12009

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli O103:H2 str. 12009 is a Gram-negative bacterium characterized by its rod shape, a temperature preference for mesophilic conditions (optimal growth at 37°C), and is classified as a heterotroph. This microbe is a facultative anaerobe, capable of thriving in both aerobic and anaerobic environments. As a Gram-negative organism, E. coli O103:H2 str. 12009 possesses a thin peptidoglycan layer surrounded by an outer membrane, which contains lipopolysaccharides. This structure plays a crucial role in its pathogenicity and resistance to certain antibiotics. Its rod-shaped morphology allows for motility, aided by flagella, which facilitates colonization and biofilm formation on various surfaces. Being mesophilic, this strain optimally grows at human body temperature, making it well-suited for life in the intestinal tract of warm-blooded animals, including humans. As a heterotroph, E. coli O103:H2 str. 12009 relies on organic compounds for energy and carbon sources, primarily deriving nutrients from the host's gut environment. As a facultative anaerobe, it can grow in the presence or absence of oxygen. This adaptability enables it to survive in different habitats, including the intestines, where it can exploit a variety of organic substrates. Beyond the gut, E. coli can be found in various environments, such as soil, water, and food sources, which increases its potential to enter the food chain and impact human health. In terms of pathogenicity, E. coli O103:H2 is notable for its association with foodborne illness outbreaks, particularly those linked to contaminated beef and leafy greens. Strain O103:H2 produces Shiga toxin, leading to hemolytic uremic syndrome (HUS) in severe cases, emphasizing the importance of food safety and hygiene practices to prevent infections caused by this strain.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain12009

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli O103:H2 str. 12009
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli O103:H2 str. 12009


Gene Summary

Adenine Count

19113 bp

Thymine Count

19331 bp

Guanine Count

19484 bp

Cytosine Count

17618 bp

Genome Length

75546 bp

Protein-coding Genes

80 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii secretion system protein gsplECO103_RS28075Not AvailablePositive11194 - 1247148193.7
type ii secretion system protein gspmECO103_RS28080Not AvailablePositive12458 - 1297319851.1
prepilin peptidaseECO103_RS28085Not AvailablePositive13142 - 1385826668.5
gsps family t2ss pilot lipoprotein variant eptoECO103_RS28090Not AvailablePositive13952 - 1435314849.8
conjugal transfer protein trajECO103_RS31990Not AvailablePositive14479 - 146436174.36
conjugal transfer protein trajECO103_RS31995Not AvailablePositive14942 - 1523510514.8
is3 family transposaseECO103_RS28110Not AvailablePositive15292 - 1650546240.1
hypothetical proteinECO103_RS33070Not AvailablePositive17228 - 173624951.16
polysaccharide deacetylase family proteinECO103_RS28125Not AvailablePositive17967 - 1878832191.6
glycosyltransferase family 4 proteinECO103_RS28130Not AvailablePositive18788 - 1989440797.1

Displaying genes 11 – 20 of 80 in total

Metabolites

4789 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4789 metabolites

Health Effects

No health effects information available for this bacterium.