Coraliomargarita akajimensis DSM 45221

Gram-negativeCocciNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Verrucomicrobiota

Class

Opitutia

Order

Puniceicoccales

Family

Coraliomargaritaceae

Genus

Coraliomargarita

Description

Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) is an obligately aerobic, non-spore-forming, non-motile, Gram-negative bacterium isolated from seawater surrounding the hard coral Galaxea fascicularis. The optimum temperature for growth ranges from 20 to 30 degrees Celsius, and no growth is observed at 4 or 45 degrees Celsius. The pH range for growth is 7.0-9.0, and NaCl concentrations up to 5% (w/v) are tolerated. C. akajimensis produces acid from glycerol, galactose, fructose, mannose, mannitol, sorbitol, trehalose, D-turanose, D-lyxose, D-tagatose, D-fucose, L-fucose, D-arabitol, and 5-ketogluconate. C. akajimensis is able to hydrolyze urea and DNA, but cannot hydrolyze agar, casein, aesculin, starch and gelatin. Nitrate is not reduced to nitrite. C. akajimensis is catalase negative, oxidase positive and is resistant to ampicillin and penicillin G. (Adapted from PMID 21304713). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumVerrucomicrobiota
ClassOpitutia
OrderPuniceicoccales
FamilyCoraliomargaritaceae
GenusCoraliomargarita
SpeciesCoraliomargarita akajimensis
StrainDSM 45221

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Coraliomargarita akajimensis DSM 45221
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature25
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNo

Genome Summary

Coraliomargarita akajimensis DSM 45221, complete sequence.

Gene Summary

Adenine Count

866230 bp

Thymine Count

874061 bp

Guanine Count

1013494 bp

Cytosine Count

996986 bp

Genome Length

3750771 bp

Protein-coding Genes

3021 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i restriction endonuclease subunit rCAKA_RS05735Not AvailableNegative1476990 - 1480238123674.0
upf0489 family proteinCAKA_RS05740Not AvailableNegative1480256 - 148114633370.3
n-6 dna methylaseCAKA_RS05745Not AvailableNegative1481153 - 148345985740.8
restriction endonuclease subunit sCAKA_RS05750Not AvailableNegative1483479 - 148465143807.9
class i sam-dependent dna methyltransferaseCAKA_RS05755Q60297Negative1484822 - 148708384025.1
viperin family antiviral radical sam proteinCAKA_RS05760D5EID4Positive1487396 - 148832834727.6
ankyrin repeat domain-containing proteinCAKA_RS05765Not AvailablePositive1488348 - 149096698028.8
tyrosine-type recombinase/integraseCAKA_RS05770Not AvailableNegative1490995 - 149208640166.4
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadCAKA_RS05775Q6FCK9Negative1492610 - 149364437249.6
s41 family peptidaseCAKA_RS05780Q44879Negative1493788 - 149503845874.7

Displaying genes 1131 – 1140 of 3074 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

159 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000275keto-D-sorboseC6H12O6Chemical structure of keto-D-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm00007131,5-anhydro-D-fructoseC6H10O5Chemical structure of 1,5-anhydro-D-fructoseNot available
Average162.1406Da
Monoisotopic162.05282343Da
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da

Displaying 1–10 of 159 metabolites

Health Effects

No health effects information available for this bacterium.