Hyphomicrobium denitrificans ATCC 51888

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) is an aerobic, motile Gram-negative bacterium. It has a biphasic life style, which consists of a motile phase of flagellated swarmer cells, and a cessile phase in which a long prosthecate is produced at one end of the bacterium through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. H. denitrificans can colonize the surfaces of marine environments which enables additional species to colonize at later stages. It is also able to utilize methanol as a sole source of energy. (adapted from: http://genome.jgi-psf.org/hypde/hypde.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
StrainATCC 51888

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Hyphomicrobium denitrificans ATCC 51888
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Hyphomicrobium denitrificans ATCC 51888, complete sequence.

Gene Summary

Adenine Count

700565 bp

Thymine Count

725459 bp

Guanine Count

1136928 bp

Cytosine Count

1076017 bp

Genome Length

3638969 bp

Protein-coding Genes

3429 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sdr family oxidoreductaseHDEN_RS01905Not AvailableNegative399483 - 40034630587.2
trna epoxyqueuosine(34) reductase quegHDEN_RS01910Not AvailableNegative400343 - 40145541172.2
glutathione s-transferase family proteinHDEN_RS01915Not AvailableNegative401522 - 40222626405.4
undecaprenyl-diphosphate phosphataseHDEN_RS01920Not AvailablePositive402358 - 40316428915.2
pts sugar transporter subunit iiaHDEN_RS01925Not AvailableNegative403228 - 40369216690.4
ribosome hibernation-promoting factor, hpf/yfia familyHDEN_RS01930Not AvailableNegative403788 - 40438421942.8
rna polymerase factor sigma-54HDEN_RS01935Not AvailableNegative404604 - 40613656671.5
lps export abc transporter atp-binding proteinHDEN_RS01940Not AvailableNegative406183 - 40704931410.9
lps export abc transporter periplasmic protein lptcHDEN_RS01945Not AvailableNegative407108 - 40903067732.0
ribonuclease h-like domain-containing proteinHDEN_RS01950Not AvailableNegative409170 - 40978722542.2

Displaying genes 461 – 470 of 3529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.