Hyphomicrobium denitrificans ATCC 51888

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) is an aerobic, motile Gram-negative bacterium. It has a biphasic life style, which consists of a motile phase of flagellated swarmer cells, and a cessile phase in which a long prosthecate is produced at one end of the bacterium through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. H. denitrificans can colonize the surfaces of marine environments which enables additional species to colonize at later stages. It is also able to utilize methanol as a sole source of energy. (adapted from: http://genome.jgi-psf.org/hypde/hypde.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
StrainATCC 51888

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Hyphomicrobium denitrificans ATCC 51888
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Hyphomicrobium denitrificans ATCC 51888, complete sequence.

Gene Summary

Adenine Count

700565 bp

Thymine Count

725459 bp

Guanine Count

1136928 bp

Cytosine Count

1076017 bp

Genome Length

3638969 bp

Protein-coding Genes

3429 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
imelysin family proteinHDEN_RS01460Not AvailablePositive311602 - 31288545437.4
multicopper oxidase family proteinHDEN_RS01465Not AvailablePositive312968 - 31439551678.8
di-heme oxidoredictase family proteinHDEN_RS01470Not AvailablePositive314392 - 31557342017.8
imelysin family proteinHDEN_RS01475Not AvailablePositive315570 - 31663738783.6
duf1513 domain-containing proteinHDEN_RS01480Not AvailablePositive316618 - 31773039352.8
30s ribosomal protein s12 methylthiotransferase rimoHDEN_RS01485Not AvailablePositive317824 - 31920950514.1
cation diffusion facilitator family transporterHDEN_RS01490Not AvailableNegative319206 - 32018034492.2
metal-dependent hydrolaseHDEN_RS01495Not AvailablePositive320337 - 32128733518.4
tetr/acrr family transcriptional regulatorHDEN_RS01500Not AvailableNegative321256 - 32186422063.4
tade/tadg family type iv pilus assembly proteinHDEN_RS01505Not AvailableNegative322106 - 32273822730.3

Displaying genes 371 – 380 of 3529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.