Hyphomicrobium denitrificans ATCC 51888

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) is an aerobic, motile Gram-negative bacterium. It has a biphasic life style, which consists of a motile phase of flagellated swarmer cells, and a cessile phase in which a long prosthecate is produced at one end of the bacterium through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. H. denitrificans can colonize the surfaces of marine environments which enables additional species to colonize at later stages. It is also able to utilize methanol as a sole source of energy. (adapted from: http://genome.jgi-psf.org/hypde/hypde.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
StrainATCC 51888

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Hyphomicrobium denitrificans ATCC 51888
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Hyphomicrobium denitrificans ATCC 51888, complete sequence.

Gene Summary

Adenine Count

700565 bp

Thymine Count

725459 bp

Guanine Count

1136928 bp

Cytosine Count

1076017 bp

Genome Length

3638969 bp

Protein-coding Genes

3429 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aspartate-semialdehyde dehydrogenaseHDEN_RS16425Not AvailableNegative3396599 - 339762737549.2
hypothetical proteinHDEN_RS16430Not AvailablePositive3397814 - 339827216184.8
3-isopropylmalate dehydrogenaseHDEN_RS16435Not AvailableNegative3398427 - 339954240281.7
duf4337 domain-containing proteinHDEN_RS16440Not AvailableNegative3399701 - 340029721201.3
2,3-bisphosphoglycerate-dependent phosphoglycerate mutaseHDEN_RS16445Not AvailableNegative3400328 - 340099024730.6
4-hydroxy-tetrahydrodipicolinate reductaseHDEN_RS16450Not AvailableNegative3401044 - 340184427235.8
inorganic diphosphataseHDEN_RS16455Not AvailableNegative3401988 - 340251519283.2
gnat family n-acetyltransferaseHDEN_RS16460Not AvailableNegative3402635 - 340314119253.1
phasin family proteinHDEN_RS16465Not AvailableNegative3403281 - 340375717198.2
atp-dependent recd-like dna helicaseHDEN_RS16470Not AvailableNegative3404006 - 340531048455.6

Displaying genes 3291 – 3300 of 3529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.