Hyphomicrobium denitrificans ATCC 51888

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) is an aerobic, motile Gram-negative bacterium. It has a biphasic life style, which consists of a motile phase of flagellated swarmer cells, and a cessile phase in which a long prosthecate is produced at one end of the bacterium through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. H. denitrificans can colonize the surfaces of marine environments which enables additional species to colonize at later stages. It is also able to utilize methanol as a sole source of energy. (adapted from: http://genome.jgi-psf.org/hypde/hypde.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
StrainATCC 51888

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Hyphomicrobium denitrificans ATCC 51888
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Hyphomicrobium denitrificans ATCC 51888, complete sequence.

Gene Summary

Adenine Count

700565 bp

Thymine Count

725459 bp

Guanine Count

1136928 bp

Cytosine Count

1076017 bp

Genome Length

3638969 bp

Protein-coding Genes

3429 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gtpase obgeHDEN_RS00970Not AvailablePositive200778 - 20181836736.5
calcium:proton antiporterHDEN_RS00975Not AvailablePositive201903 - 20300038544.1
glutamate 5-kinaseHDEN_RS00980Not AvailablePositive203152 - 20431241002.4
glutamate-5-semialdehyde dehydrogenaseHDEN_RS00985Not AvailablePositive204315 - 20560145059.3
nicotinate-nucleotide adenylyltransferaseHDEN_RS00990Not AvailablePositive205626 - 20627924025.3
ribosome silencing factorHDEN_RS00995Not AvailablePositive206391 - 20685216856.8
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhHDEN_RS01000Not AvailablePositive207016 - 20749817049.5
dna-deoxyinosine glycosylaseHDEN_RS01005Not AvailablePositive207505 - 20804119728.8
sdr family nad(p)-dependent oxidoreductaseHDEN_RS01010Not AvailableNegative208020 - 20884430124.6
meta domain-containing proteinHDEN_RS01015Not AvailableNegative208962 - 20935113417.8

Displaying genes 271 – 280 of 3529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
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Health Effects

No health effects information available for this bacterium.