Hyphomicrobium denitrificans ATCC 51888

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Hyphomicrobiaceae

Genus

Hyphomicrobium

Description

Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) is an aerobic, motile Gram-negative bacterium. It has a biphasic life style, which consists of a motile phase of flagellated swarmer cells, and a cessile phase in which a long prosthecate is produced at one end of the bacterium through which budding cells emerge. Newly budded cells in turn produce flagella and go through a motile phase and the cycle continues. H. denitrificans can colonize the surfaces of marine environments which enables additional species to colonize at later stages. It is also able to utilize methanol as a sole source of energy. (adapted from: http://genome.jgi-psf.org/hypde/hypde.home.html). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyHyphomicrobiaceae
GenusHyphomicrobium
SpeciesHyphomicrobium denitrificans
StrainATCC 51888

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Hyphomicrobium denitrificans ATCC 51888
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Hyphomicrobium denitrificans ATCC 51888, complete sequence.

Gene Summary

Adenine Count

700565 bp

Thymine Count

725459 bp

Guanine Count

1136928 bp

Cytosine Count

1076017 bp

Genome Length

3638969 bp

Protein-coding Genes

3429 genes

Non-Coding Genes

100 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lps translocon maturation chaperone lptmHDEN_RS00185Not AvailablePositive38231 - 384527450.12
diaminopimelate decarboxylaseHDEN_RS00190Not AvailablePositive38577 - 3984845483.6
duf3800 domain-containing proteinHDEN_RS00195Not AvailableNegative40102 - 4099534089.9
tigr02302 family proteinHDEN_RS00200Not AvailablePositive41265 - 4395599227.1
lysr substrate-binding domain-containing proteinHDEN_RS00205Not AvailablePositive44155 - 4511134573.4
hypothetical proteinHDEN_RS00210Not AvailableNegative45132 - 4607634840.5
poly(3-hydroxybutyrate) depolymeraseHDEN_RS00215Not AvailableNegative46149 - 4724038392.6
penicillin-binding protein 1cHDEN_RS00220Not AvailableNegative47319 - 4942476081.7
alpha-2-macroglobulin family proteinHDEN_RS00225Not AvailableNegative49601 - 54946192256.0
hypothetical proteinHDEN_RS00230Not AvailableNegative55261 - 5579719468.4

Displaying genes 111 – 120 of 3529 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.