Methylovorus glucosetrophus SIP3-4

Gram-negativeRodNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Methylophilaceae

Genus

Methylovorus

Description

This organism is able to utilize methylamines, potentially significant greenhouse gases, as a sole source of energy. This strain will be used for comparative analysis with other methylotrophs. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyMethylophilaceae
GenusMethylovorus
SpeciesMethylovorus glucosotrophus
StrainSIP3-4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy source Methylotroph
PathogenicityNot Available

Genome Summary

Methylovorus glucosotrophus SIP3-4 plasmid pMsip02, complete

Gene Summary

Adenine Count

2487 bp

Thymine Count

2676 bp

Guanine Count

2301 bp

Cytosine Count

2352 bp

Genome Length

9816 bp

Protein-coding Genes

13 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
atp-dependent dna helicaseMSIP34_RS02080Not AvailablePositive418423 - 42065784581.3
dna topoisomerase ibMSIP34_RS02085Not AvailableNegative420718 - 42184242325.7
hypothetical proteinMSIP34_RS02090Not AvailablePositive422063 - 42238911823.3
plp-dependent aminotransferase family proteinMSIP34_RS02095Not AvailableNegative422390 - 42380551946.9
cytochrome c oxidase accessory protein ccogMSIP34_RS02100Not AvailablePositive423933 - 42537252576.4
duf6402 family proteinMSIP34_RS02105Not AvailablePositive425617 - 42683746073.4
hypothetical proteinMSIP34_RS02110Not AvailablePositive426834 - 42725916796.4
eal domain-containing proteinMSIP34_RS02115Not AvailableNegative427265 - 42948184114.5
hdod domain-containing proteinMSIP34_RS02120Not AvailableNegative429491 - 43169580669.3
tonb-dependent receptorMSIP34_RS02125Not AvailableNegative432091 - 43450287764.9

Displaying genes 491 – 500 of 2881 in total

Metabolites

1687 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 1687 metabolites

Health Effects

No health effects information available for this bacterium.