Microbacterium azadirachtae

rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Microbacterium

Description

Microbacterium azadirachtae is a Gram-positive, aerobic, rod-shaped bacterium that has been characterized by its non-spore-forming nature and optimal growth temperature of 29.0°C. This microbe is notable for its resilience in aerobic environments, where it presumably engages in metabolic processes that require oxygen. The rod shape of M. azadirachtae suggests a structural adaptation that may facilitate nutrient absorption and motility in its ecological niche. Its Gram-positive nature indicates a thick peptidoglycan layer in the cell wall, which may contribute to its stability and ability to withstand environmental stresses. Although specific ecological roles are not detailed in the available data, the growth temperature of 29.0°C suggests that M. azadirachtae may thrive in warm environments, possibly those associated with decaying organic matter or agricultural systems. This temperature preference could also indicate a potential association with tropical or subtropical ecosystems, particularly given its name, which references the neem tree (Azadirachta indica), a plant known for its diverse biological interactions. The unique combination of traits exhibited by Microbacterium azadirachtae underscores its potential importance in nutrient cycling and its adaptability to specific environmental conditions, warranting further exploration of its ecological roles and potential applications in biotechnology or agriculture.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusMicrobacterium
SpeciesMicrobacterium azadirachtae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
Habitatmaize rhizosphere soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbacterium azadirachtae strain DSM 23848 RL72_contig000086,

Gene Summary

Adenine Count

596284 bp

Thymine Count

596700 bp

Guanine Count

1422215 bp

Cytosine Count

1422387 bp

Genome Length

4037586 bp

Protein-coding Genes

3749 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
homoserine dehydrogenaseRL72_02874Q58997Negative3069076 - 307013135857.7
amino-acid permease roccRL72_02875O31462Positive3070416 - 307193954336.2
alanine racemaseRL72_02876A0KLG5Positive3071936 - 307306339248.9
bacterial transcriptional regulatorRL72_02877Not AvailablePositive3073138 - 307388726371.4
hth-type transcriptional regulator kiprRL72_02878Not AvailableNegative3073881 - 307469028739.7
homocysteine s-methyltransferaseRL72_02879Q47690Positive3074753 - 307568231698.4
undecaprenyl-phosphate mannosyltransferaseRL72_02880D4GUA0Positive3075739 - 307701645972.5
undecaprenyl phosphate-alpha-4-amino-4-deoxy-l-arabinose arabinosyl transferaseRL72_02881O34575Positive3077013 - 307907969804.9
putative transcriptional regulatory protein tcrxRL72_02882Not AvailablePositive3079106 - 307990328005.6
putative sensor histidine kinase tcryRL72_02883O69729Positive3079900 - 308141752044.6

Displaying genes 2861 – 2870 of 7757 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

260 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 260 metabolites

Health Effects

No health effects information available for this bacterium.