Sideroxydans lithotrophicus ES-1

Gram-negativeMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Gallionellaceae

Genus

Sideroxydans

Description

Sideroxydans lithotrophicus (strain ES-1) is an autotrophic iron-oxidizing Gram-negative bacterium isolated from iron contaminated groundwater in Michigan. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=37127). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderNitrosomonadales
FamilyGallionellaceae
GenusSideroxydans
SpeciesSideroxydans lithotrophicus
StrainES-1

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceChemolithoautotroph
PathogenicityNo

Genome Summary

Sideroxydans lithotrophicus ES-1, complete sequence.

Gene Summary

Adenine Count

635943 bp

Thymine Count

639357 bp

Guanine Count

866881 bp

Cytosine Count

861475 bp

Genome Length

3003656 bp

Protein-coding Genes

2928 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtdp-4-dehydrorhamnose reductaseSLIT_RS14530Q2SYI1Positive2927376 - 292827533008.3
tolc family outer membrane proteinSLIT_RS14535Not AvailableNegative2928458 - 292978948215.7
protein-l-isoaspartate o-methyltransferaseSLIT_RS14540A9BH07Negative2929875 - 293052823919.0
phosphomethylpyrimidine synthase thicSLIT_RS14545A6SUX7Positive2930756 - 293262769979.9
hypothetical proteinSLIT_RS14550Not AvailableNegative2932656 - 293304514962.5
hnh endonucleaseSLIT_RS14555Not AvailableNegative2933051 - 293383029489.4
ykgj family cysteine cluster proteinSLIT_RS14560P0AFT9Positive2933986 - 29342469036.0
duf1289 domain-containing proteinSLIT_RS14565Not AvailablePositive2934255 - 29344587629.01
undecaprenyl-diphosphate phosphataseSLIT_RS14570Q2Y6P3Positive2934465 - 293528930107.3
rhodanese-like domain-containing proteinSLIT_RS14575Not AvailableNegative2935337 - 293578916680.8

Displaying genes 2941 – 2950 of 3025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

125 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000430hercynineC9H15N3O2Chemical structure of hercynineNot available
Average197.238Da
Monoisotopic197.1164267Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da

Displaying 1–10 of 125 metabolites

Health Effects

No health effects information available for this bacterium.