Sideroxydans lithotrophicus ES-1

Gram-negativeMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Gallionellaceae

Genus

Sideroxydans

Description

Sideroxydans lithotrophicus (strain ES-1) is an autotrophic iron-oxidizing Gram-negative bacterium isolated from iron contaminated groundwater in Michigan. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=37127). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Betaproteobacteria
Order	Nitrosomonadales
Family	Gallionellaceae
Genus	Sideroxydans
Species	Sideroxydans lithotrophicus
Strain	ES-1

Profile

Physiology
Gram staining properties	Negative
Shape	Not Available
Mobility	Yes
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Chemolithoautotroph
Pathogenicity	No

Genome Summary

Sideroxydans lithotrophicus ES-1, complete sequence.

NC_013959.1

Gene Summary

Adenine Count

635943 bp

Thymine Count

639357 bp

Guanine Count

866881 bp

Cytosine Count

861475 bp

Genome Length

3003656 bp

Protein-coding Genes

2928 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
tuse/dsrc/dsvc family sulfur relay protein	SLIT_RS14140	Q89AA8	Positive	2847725 - 2848039	12245.4
hypothetical protein	SLIT_RS14145	Not Available	Negative	2848399 - 2848887	18854.8
dna polymerase i	SLIT_RS14150	P00582	Negative	2849411 - 2852200	102134.0
tigr00730 family rossman fold protein	SLIT_RS14155	Not Available	Positive	2852367 - 2853083	26738.4
duf2782 domain-containing protein	SLIT_RS14160	Not Available	Positive	2853121 - 2853450	12160.6
homoserine kinase	SLIT_RS14165	Q82UL3	Positive	2853466 - 2854407	34595.6
bpss1780 family membrane protein	SLIT_RS14170	Not Available	Positive	2854420 - 2855196	28054.6
hypothetical protein	SLIT_RS14175	Not Available	Positive	2855199 - 2855690	18110.7
cc0125/cc1285 family lipoprotein	SLIT_RS16005	Not Available	Negative	2855918 - 2856460	19926.2
hypothetical protein	SLIT_RS14180	Not Available	Negative	2856586 - 2857263	24850.8

Displaying genes 2861 – 2870 of 3025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4	Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000272	(E)-4-coumarateC9H7O3	Not available	Average163.1501Da Monoisotopic163.0395191Da
BASm0000288	aminohydroquinoneC6H7NO2	Not available	Average125.127Da Monoisotopic125.0476785Da
BASm0000305	tetrathionateO6S4	Not available	Average224.24Da Monoisotopic223.8588696Da
BASm0000377	(S)-malateC4H4O5	Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000401	(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8	Not available	Average286.218Da Monoisotopic286.0579371Da
BASm0000430	hercynineC9H15N3O2	Not available	Average197.238Da Monoisotopic197.1164267Da
BASm0000642	S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6S	Not available	Average397.406Da Monoisotopic397.105604055Da

Displaying 1–10 of 125 metabolites

Health Effects

No health effects information available for this bacterium.