Sideroxydans lithotrophicus ES-1

Gram-negativeMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Gallionellaceae

Genus

Sideroxydans

Description

Sideroxydans lithotrophicus (strain ES-1) is an autotrophic iron-oxidizing Gram-negative bacterium isolated from iron contaminated groundwater in Michigan. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=37127). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Betaproteobacteria
Order	Nitrosomonadales
Family	Gallionellaceae
Genus	Sideroxydans
Species	Sideroxydans lithotrophicus
Strain	ES-1

Profile

Physiology
Gram staining properties	Negative
Shape	Not Available
Mobility	Yes
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Chemolithoautotroph
Pathogenicity	No

Genome Summary

Sideroxydans lithotrophicus ES-1, complete sequence.

NC_013959.1

Gene Summary

Adenine Count

635943 bp

Thymine Count

639357 bp

Guanine Count

866881 bp

Cytosine Count

861475 bp

Genome Length

3003656 bp

Protein-coding Genes

2928 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
2,3-bisphosphoglycerate-independent phosphoglycerate mutase	SLIT_RS13090	Q3SGA3	Positive	2659971 - 2661521	56157.1
murein hydrolase activator envc	SLIT_RS13095	P37690	Positive	2661518 - 2662642	42552.7
s41 family peptidase	SLIT_RS13100	Q44879	Positive	2662656 - 2664050	49663.6
hypothetical protein	SLIT_RS13105	Not Available	Positive	2664055 - 2664456	15615.7
ggdef domain-containing protein	SLIT_RS15425	Not Available	Negative	2664492 - 2665559	40400.5
hypothetical protein	SLIT_RS13115	Not Available	Negative	2665650 - 2666324	25122.5
serine hydrolase	SLIT_RS13120	Not Available	Negative	2666321 - 2668015	62260.0
polysaccharide deacetylase family protein	SLIT_RS13125	Q5AQQ0	Positive	2668179 - 2668988	29910.7
class i sam-dependent methyltransferase	SLIT_RS13130	Not Available	Positive	2668985 - 2669695	26394.0
histone h1-like dna-binding protein	SLIT_RS15695	Not Available	Negative	2670046 - 2670660	20172.0

Displaying genes 2651 – 2660 of 3025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4	Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000272	(E)-4-coumarateC9H7O3	Not available	Average163.1501Da Monoisotopic163.0395191Da
BASm0000288	aminohydroquinoneC6H7NO2	Not available	Average125.127Da Monoisotopic125.0476785Da
BASm0000305	tetrathionateO6S4	Not available	Average224.24Da Monoisotopic223.8588696Da
BASm0000377	(S)-malateC4H4O5	Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000401	(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8	Not available	Average286.218Da Monoisotopic286.0579371Da
BASm0000430	hercynineC9H15N3O2	Not available	Average197.238Da Monoisotopic197.1164267Da
BASm0000642	S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6S	Not available	Average397.406Da Monoisotopic397.105604055Da

Displaying 1–10 of 125 metabolites

Health Effects

No health effects information available for this bacterium.