Sideroxydans lithotrophicus ES-1

Gram-negativeMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Gallionellaceae

Genus

Sideroxydans

Description

Sideroxydans lithotrophicus (strain ES-1) is an autotrophic iron-oxidizing Gram-negative bacterium isolated from iron contaminated groundwater in Michigan. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=37127). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Betaproteobacteria
Order	Nitrosomonadales
Family	Gallionellaceae
Genus	Sideroxydans
Species	Sideroxydans lithotrophicus
Strain	ES-1

Profile

Physiology
Gram staining properties	Negative
Shape	Not Available
Mobility	Yes
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Chemolithoautotroph
Pathogenicity	No

Genome Summary

Sideroxydans lithotrophicus ES-1, complete sequence.

NC_013959.1

Gene Summary

Adenine Count

635943 bp

Thymine Count

639357 bp

Guanine Count

866881 bp

Cytosine Count

861475 bp

Genome Length

3003656 bp

Protein-coding Genes

2928 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
potassium transporter kup	SLIT_RS11950	Q3SH71	Positive	2415515 - 2417383	67118.4
electron transport complex subunit rsxa	SLIT_RS11955	A4Y6J0	Positive	2417484 - 2418059	20291.8
electron transport complex subunit rsxb	SLIT_RS11960	Q3SHB7	Positive	2418056 - 2418610	19327.8
electron transport complex subunit rsxc	SLIT_RS11965	C5BDE7	Positive	2418607 - 2420310	61430.8
electron transport complex subunit rsxd	SLIT_RS11970	B7LQP0	Positive	2420320 - 2421348	36888.9
electron transport complex subunit rsxg	SLIT_RS11975	B7UVW9	Positive	2421345 - 2421992	23437.5
electron transport complex subunit e	SLIT_RS11980	Q8D885	Positive	2421989 - 2422696	24759.2
endonuclease iii	SLIT_RS11985	P0AB84	Positive	2422704 - 2423336	23673.9
duf1841 family protein	SLIT_RS11990	Not Available	Positive	2423336 - 2423758	16484.5
cob(i)yrinic acid a,c-diamide adenosyltransferase	SLIT_RS11995	Q1LJ80	Positive	2423758 - 2424288	19110.0

Displaying genes 2421 – 2430 of 3025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4	Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000272	(E)-4-coumarateC9H7O3	Not available	Average163.1501Da Monoisotopic163.0395191Da
BASm0000288	aminohydroquinoneC6H7NO2	Not available	Average125.127Da Monoisotopic125.0476785Da
BASm0000305	tetrathionateO6S4	Not available	Average224.24Da Monoisotopic223.8588696Da
BASm0000377	(S)-malateC4H4O5	Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000401	(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8	Not available	Average286.218Da Monoisotopic286.0579371Da
BASm0000430	hercynineC9H15N3O2	Not available	Average197.238Da Monoisotopic197.1164267Da
BASm0000642	S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6S	Not available	Average397.406Da Monoisotopic397.105604055Da

Displaying 1–10 of 125 metabolites

Health Effects

No health effects information available for this bacterium.