Sideroxydans lithotrophicus ES-1

Gram-negativeMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Gallionellaceae

Genus

Sideroxydans

Description

Sideroxydans lithotrophicus (strain ES-1) is an autotrophic iron-oxidizing Gram-negative bacterium isolated from iron contaminated groundwater in Michigan. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=37127). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Betaproteobacteria
Order	Nitrosomonadales
Family	Gallionellaceae
Genus	Sideroxydans
Species	Sideroxydans lithotrophicus
Strain	ES-1

Profile

Physiology
Gram staining properties	Negative
Shape	Not Available
Mobility	Yes
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Chemolithoautotroph
Pathogenicity	No

Genome Summary

Sideroxydans lithotrophicus ES-1, complete sequence.

NC_013959.1

Gene Summary

Adenine Count

635943 bp

Thymine Count

639357 bp

Guanine Count

866881 bp

Cytosine Count

861475 bp

Genome Length

3003656 bp

Protein-coding Genes

2928 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
dsbc family protein	SLIT_RS08525	Not Available	Negative	1716306 - 1717019	26967.7
ompp1/fadl family transporter	SLIT_RS08530	Not Available	Negative	1717194 - 1718462	43621.6
sulfur carrier protein dsre2	SLIT_RS08535	D3RPC1	Negative	1718541 - 1719011	17309.7
sulfurtransferase tusa family protein	SLIT_RS08540	D3RPC0	Negative	1719047 - 1719274	8275.08
sulp family inorganic anion transporter	SLIT_RS08545	Q8GYH8	Negative	1719521 - 1721227	61141.5
dmsc/ynfh family molybdoenzyme membrane anchor subunit	SLIT_RS08550	D3RNN6	Negative	1721291 - 1722262	35432.1
4fe-4s dicluster domain-containing protein	SLIT_RS08555	D3RNN7	Negative	1722271 - 1723002	26958.1
molybdopterin oxidoreductase family protein	SLIT_RS08560	D3RNN8	Negative	1723037 - 1725952	109192.0
sulfate adenylyltransferase	SLIT_RS08565	Q3SEZ6	Positive	1726193 - 1727407	44211.4
hypothetical protein	SLIT_RS08570	Not Available	Positive	1727467 - 1728303	30889.0

Displaying genes 1721 – 1730 of 3025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4	Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000272	(E)-4-coumarateC9H7O3	Not available	Average163.1501Da Monoisotopic163.0395191Da
BASm0000288	aminohydroquinoneC6H7NO2	Not available	Average125.127Da Monoisotopic125.0476785Da
BASm0000305	tetrathionateO6S4	Not available	Average224.24Da Monoisotopic223.8588696Da
BASm0000377	(S)-malateC4H4O5	Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000401	(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8	Not available	Average286.218Da Monoisotopic286.0579371Da
BASm0000430	hercynineC9H15N3O2	Not available	Average197.238Da Monoisotopic197.1164267Da
BASm0000642	S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6S	Not available	Average397.406Da Monoisotopic397.105604055Da

Displaying 1–10 of 125 metabolites

Health Effects

No health effects information available for this bacterium.