Sideroxydans lithotrophicus ES-1

Gram-negativeMotileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Nitrosomonadales

Family

Gallionellaceae

Genus

Sideroxydans

Description

Sideroxydans lithotrophicus (strain ES-1) is an autotrophic iron-oxidizing Gram-negative bacterium isolated from iron contaminated groundwater in Michigan. (Adapted from PMID: http://www.ncbi.nlm.nih.gov/sites/genomeprj?Db=genomeprj&cmd=ShowDetailView&TermToSearch=37127). (EBI Integr8)

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Betaproteobacteria
Order	Nitrosomonadales
Family	Gallionellaceae
Genus	Sideroxydans
Species	Sideroxydans lithotrophicus
Strain	ES-1

Profile

Physiology
Gram staining properties	Negative
Shape	Not Available
Mobility	Yes
Flagellar presence	Yes
Number of membranes	2

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobic
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Aquatic
Biotic relationship	Free living
Host(s)	Not Available
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Chemolithoautotroph
Pathogenicity	No

Genome Summary

Sideroxydans lithotrophicus ES-1, complete sequence.

NC_013959.1

Gene Summary

Adenine Count

635943 bp

Thymine Count

639357 bp

Guanine Count

866881 bp

Cytosine Count

861475 bp

Genome Length

3003656 bp

Protein-coding Genes

2928 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

Genes

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
duf6602 domain-containing protein	SLIT_RS05445	Not Available	Negative	1066677 - 1067372	26132.2
n-6 dna methylase	SLIT_RS05450	Q47282	Negative	1067359 - 1069806	90701.5
dead/deah box helicase family protein	SLIT_RS05455	P08956	Negative	1069825 - 1072368	97259.0
tnsd family tn7-like transposition protein	SLIT_RS15540	Not Available	Negative	1072504 - 1074036	58442.6
hypothetical protein	SLIT_RS15815	Not Available	Negative	1074037 - 1074972	36115.3
helix-turn-helix transcriptional regulator	SLIT_RS16375	Not Available	Positive	1075076 - 1075450	13807.9
hypothetical protein	SLIT_RS05480	Not Available	Positive	1075674 - 1076651	37095.7
hypothetical protein	SLIT_RS05485	Not Available	Positive	1076657 - 1078690	77455.0
hypothetical protein	SLIT_RS05490	Not Available	Positive	1078690 - 1080018	50066.6
hypothetical protein	SLIT_RS15105	Not Available	Positive	1080866 - 1081795	35302.0

Displaying genes 1101 – 1110 of 3025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000237	(R)-4'-phosphopantothenateC9H18NO8P	Not available	Average299.2149Da Monoisotopic299.0770031Da
BASm0000251	2-dehydropantoateC6H9O4	Not available	Average145.1333Da Monoisotopic145.050083776Da
BASm0000272	(E)-4-coumarateC9H7O3	Not available	Average163.1501Da Monoisotopic163.0395191Da
BASm0000288	aminohydroquinoneC6H7NO2	Not available	Average125.127Da Monoisotopic125.0476785Da
BASm0000305	tetrathionateO6S4	Not available	Average224.24Da Monoisotopic223.8588696Da
BASm0000377	(S)-malateC4H4O5	Not available	Average132.0716Da Monoisotopic132.005873238Da
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000401	(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8	Not available	Average286.218Da Monoisotopic286.0579371Da
BASm0000430	hercynineC9H15N3O2	Not available	Average197.238Da Monoisotopic197.1164267Da
BASm0000642	S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6S	Not available	Average397.406Da Monoisotopic397.105604055Da

Displaying 1–10 of 125 metabolites

Health Effects

No health effects information available for this bacterium.