Methanocaldococcus vulcanius M7

Gram-negativeCocciNon-motileAnaerobic

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Methanococci

Order

Methanococcales

Family

Methanocaldococcaceae

Genus

Methanocaldococcus

Description

Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) is an anaerobic, autotrophic, hyperthermophilic methanogen archaeon isolated from a deep-sea hydrothermal chimney sample collected on the East Pacific Rise at a depth of 2600 m. The temperature range for growth at pH 6.5 is 49-89 degrees Celsius, with optimum growth at 80 degrees Celsius. The optimum pH for growth is 6.5, and the optimum NaCl concentration for growth is around 25 g/l. It uses H2 and CO2 as the only substrates for growth and methane production. Tungsten, selenium and yeast extract stimulate growth significantly. In the presence of CO2 and H2, the organism reduces elemental sulphur to hydrogen sulphide. Growth is inhibited by chloramphenicol and rifampicin, but not by ampicillin, kanamycin, penicillin and streptomycin. As determined by 16S rDNA gene sequence analysis, this organism is closely related to Methanococcus jannaschii (strain JAL-1T). However, despite the high percentage of similarity between their 16S rDNA sequences (97.1%), the DNA-DNA hybridization levels between these strains are less than 5%. On the basis of these observations and physiological traits, it is proposed that this organism should be placed in a new species, Methanococcus vulcanius. (Adaptated from PMID: 10319479). (HAMAP: METVM)

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassMethanococci
OrderMethanococcales
FamilyMethanocaldococcaceae
GenusMethanocaldococcus
SpeciesMethanocaldococcus vulcanius
StrainM7

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Methanocaldococcus vulcanius M7
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperature80
Temperature rangeHyperthermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceAutotroph
PathogenicityNo

Genome Summary

Methanocaldococcus vulcanius M7


Gene Summary

Adenine Count

1521 bp

Thymine Count

1768 bp

Guanine Count

556 bp

Cytosine Count

859 bp

Genome Length

4704 bp

Protein-coding Genes

2 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinMETVU_RS08790Not AvailablePositive487 - 94217037.5
minichromosome maintenance protein mcmMETVU_RS08795Not AvailableNegative1651 - 4497109104.0
hypothetical proteinMETVU_RS08735Not AvailablePositive877 - 11199255.22
type ii toxin-antitoxin system rele family toxinMETVU_RS08740Not AvailableNegative1120 - 140411301.9
hypothetical proteinMETVU_RS08745Not AvailablePositive1769 - 209512414.5
hypothetical proteinMETVU_RS08750Not AvailablePositive2110 - 254717286.6
hypothetical proteinMETVU_RS08755Not AvailablePositive2540 - 291114435.5
simpl domain-containing proteinMETVU_RS08760Not AvailablePositive3238 - 400529494.1
hypothetical proteinMETVU_RS08765Not AvailablePositive5174 - 554214304.6
hypothetical proteinMETVU_RS08770Not AvailablePositive5646 - 766176898.2

Displaying genes 1 – 10 of 1784 in total

Metabolites

176 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001971heptanedioateC7H10O4Chemical structure of heptanedioateNot available
Average158.154Da
Monoisotopic158.059006Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003462(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinateC13H19N4O12PChemical structure of (2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate3031-95-6
Average454.2833Da
Monoisotopic454.0737086Da
BASm0003763(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateC11H12NO6PChemical structure of (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphateNot available
Average285.1898Da
Monoisotopic285.0402236Da
BASm00038442,5-diamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphateC9H14N5O8PChemical structure of 2,5-diamino-6-(1-D-ribosylamino)pyrimidin-4(3H)-one 5'-phosphateNot available
Average351.2099Da
Monoisotopic351.057998961Da
BASm0003878(2S)-2-phospholactateC3H4O6PChemical structure of (2S)-2-phospholactateNot available
Average167.034Da
Monoisotopic166.976195587Da
BASm0003889(S)-2-ureidoglycineC3H7N3O3Chemical structure of (S)-2-ureidoglycineNot available
Average133.106Da
Monoisotopic133.048741105Da
BASm0003987cob(I)alaminC62H88CoN13O14PChemical structure of cob(I)alamin18534-66-2
Average1329.3478Da
Monoisotopic1328.564331Da
BASm0004122ADP-L-glycero-beta-D-manno-heptoseC17H25N5O16P2Chemical structure of ADP-L-glycero-beta-D-manno-heptoseNot available
Average617.355Da
Monoisotopic617.078250901Da

Displaying 1–10 of 176 metabolites

Health Effects

No health effects information available for this bacterium.