Vibrio atlanticus LGP32

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio atlanticus LGP32 is a Gram-negative, rod-shaped bacterium that typically occurs as single cells in aquatic environments. As a heterotroph, this species utilizes organic compounds as its energy source, allowing it to thrive in diverse aquatic habitats where organic matter is available. Its facultative anaerobic nature indicates that V. atlanticus LGP32 is capable of surviving in both aerobic and anaerobic conditions, adapting to varying oxygen levels in its environment. This adaptability not only underscores the organism's ecological versatility but may also enhance its resilience in fluctuating aquatic systems. Furthermore, the presence of this bacterium in marine ecosystems may suggest its role in the degradation of organic materials, contributing to nutrient cycling and overall ecosystem health. Understanding the traits of V. atlanticus LGP32 provides insights into its potential ecological functions and interactions within marine microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio atlanticus
StrainLGP32

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Vibrio atlanticus LGP32
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Bivalvia
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Vibrio atlanticus chromosome 1, complete sequence.

Gene Summary

Adenine Count

924798 bp

Thymine Count

921369 bp

Guanine Count

725268 bp

Cytosine Count

727868 bp

Genome Length

3299303 bp

Protein-coding Genes

2854 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycine betaine/l-proline abc transporter atp-binding protein provVS_RS05520Not AvailablePositive1246885 - 124807243440.1
glycine betaine/l-proline abc transporter permease prowVS_RS05525Not AvailablePositive1248076 - 124917039148.6
glycine betaine/l-proline abc transporter substrate-binding protein proxVS_RS05530Not AvailablePositive1249163 - 125017036822.3
yybh family proteinVS_RS05535Not AvailableNegative1250361 - 125073514098.3
lysr family transcriptional regulatorVS_RS05540Not AvailablePositive1250878 - 125174432263.9
heme abc transporter atp-binding protein/permease cydcVS_RS05545Not AvailableNegative1251899 - 125362063537.6
heme abc transporter permease/atp-binding protein cyddVS_RS05550Not AvailableNegative1253613 - 125539765397.6
thioredoxin-disulfide reductaseVS_RS05555Not AvailableNegative1255559 - 125651834528.8
duf6575 domain-containing proteinVS_RS22960Not AvailablePositive1256832 - 125713711609.3
hipa domain-containing proteinVS_RS05565Not AvailablePositive1257182 - 125810535897.3

Displaying genes 1111 – 1120 of 2977 in total

Metabolites

1739 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da

Displaying 1–10 of 1739 metabolites

Health Effects

No health effects information available for this bacterium.