Isosphaera pallida ATCC 43644

Gram-negativeCocciMotileAerobic

Kingdom

Pseudomonadati

Phylum

Planctomycetota

Class

Planctomycetia

Order

Isosphaerales

Family

Isosphaeraceae

Genus

Isosphaera

Description

Isosphaera pallida strain IS1B was isolated from a hot spring in Kah-nee-tah, Oregon, USA. It is the only budding bacterium known to glide and the only heterotrophic bacterium known to be phototactic. Cells are spherical (2.5 to 3 um) in diameter, with cell growth and division occurring by intercalary budding, resulting in filaments. The cells are salmon-colored (caused by carotenoids) and contain gas vesicles. The cells contain numerous pili but no flagella. Under some conditions cells form motile, macroscopic aggregates,or "comets". Aggregation and motility were observed in both the light and the dark, however comets were strongly phototactic. I. pallida has an unusual cell wall ultrastructure and is resistant to beta-lactam antibiotics, suggesting that it does not have a peptidoglycan cell wall, and indeed cells stain Gram-negative but lack an outer membrane (adapted from http://standardsingenomics.org/index.php/sigen/article/view/sigs.1533840/sigs.1533840_pdf and PMID 3584067). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPlanctomycetota
ClassPlanctomycetia
OrderIsosphaerales
FamilyIsosphaeraceae
GenusIsosphaera
SpeciesIsosphaera pallida
StrainATCC 43644

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Isosphaera pallida ATCC 43644
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeThermophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Isosphaera pallida ATCC 43644, complete sequence.

Gene Summary

Adenine Count

1022962 bp

Thymine Count

1032460 bp

Guanine Count

1726647 bp

Cytosine Count

1690895 bp

Genome Length

5472964 bp

Protein-coding Genes

3643 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctionalISOP_RS12380B8GL43Positive3357827 - 3361135122708.0
m20/m25/m40 family metallo-hydrolaseISOP_RS12385P25152Positive3361364 - 336336170984.2
tigr02996 domain-containing proteinISOP_RS21040Not AvailablePositive3363788 - 336529956909.1
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigISOP_RS12395Not AvailableNegative3365359 - 336621031913.0
duf1559 domain-containing proteinISOP_RS12400Not AvailableNegative3366496 - 336754537888.0
hypothetical proteinISOP_RS22390Not AvailableNegative3367961 - 33681767413.64
3'-5' exoribonuclease yham family proteinISOP_RS12410A7GLX6Positive3368986 - 336999336856.2
ribonuclease r family proteinISOP_RS12415O32231Positive3370114 - 337259493382.5
calcium-binding proteinISOP_RS21045Not AvailablePositive3373006 - 337467356914.4
hypothetical proteinISOP_RS12430Not AvailableNegative3374762 - 337544523885.5

Displaying genes 2281 – 2290 of 3730 in total

Metabolites

952 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 952 metabolites

Health Effects

No health effects information available for this bacterium.