Sediminispirochaeta smaragdinae DSM 11293

SpirillaNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Spirochaetaceae

Genus

Sediminispirochaeta

Description

Sediminispirochaeta smaragdinae DSM 11293 is a nonsporulating, anaerobic bacterium characterized by its spirilla shape and its role as a chemoorganotroph, utilizing organic compounds as an energy source. This microbe thrives in specialized habitats, which likely reflect its adaptation to specific environmental conditions that may not be conducive to other microbial life forms. The anaerobic nature of S. smaragdinae suggests a metabolic process that is independent of oxygen, potentially involving fermentation or anaerobic respiration to sustain its energy needs. Its spirilla morphology may confer advantages in motility and colonization within its specialized habitat, allowing for effective navigation through complex environments, such as sediment layers or anaerobic niches. The ecological implications of S. smaragdinae's lifestyle highlight the importance of anaerobic microorganisms in biogeochemical cycles, particularly in the decomposition of organic matter, which contributes to nutrient cycling in its environment. This positions S. smaragdinae as a potential player in the maintenance of anaerobic ecosystems, emphasizing the critical roles that such specialized microbes hold in sustaining ecological balance and facilitating energy flow within their habitats.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilySpirochaetaceae
GenusSediminispirochaeta
SpeciesSediminispirochaeta smaragdinae
StrainDSM 11293

Profile

Physiology
Gram staining propertiesNot Available
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sediminispirochaeta smaragdinae DSM 11293
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Sediminispirochaeta smaragdinae DSM 11293, complete sequence.

Gene Summary

Adenine Count

1191501 bp

Thymine Count

1183646 bp

Guanine Count

1138528 bp

Cytosine Count

1140295 bp

Genome Length

4653970 bp

Protein-coding Genes

4268 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gdp-l-fucose synthase family proteinSPIRS_RS21470Not AvailableNegative4610177 - 461112134937.9
gdp-mannose 4,6-dehydrataseSPIRS_RS21475Not AvailableNegative4611114 - 461219940980.9
hypothetical proteinSPIRS_RS21480Not AvailableNegative4612544 - 461287613168.9
hypothetical proteinSPIRS_RS21485Not AvailableNegative4612900 - 46131729981.09
type ii toxin-antitoxin system hica family toxinSPIRS_RS21490Not AvailableNegative4613246 - 46134708491.2
type ii toxin-antitoxin system hicb family antitoxinSPIRS_RS21495Not AvailableNegative4613470 - 46137098747.42
udp-glucose dehydrogenase family proteinSPIRS_RS21500Not AvailableNegative4613887 - 461520948006.5
type vii toxin-antitoxin system hept family rnase toxinSPIRS_RS21505Not AvailableNegative4615273 - 461569215456.8
type vii toxin-antitoxin system mnta family adenylyltransferase antitoxinSPIRS_RS21510Not AvailableNegative4615673 - 461607714831.8
winged helix-turn-helix transcriptional regulatorSPIRS_RS21515Not AvailableNegative4616074 - 461663421272.8

Displaying genes 4321 – 4330 of 4359 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.