Sediminispirochaeta smaragdinae DSM 11293

SpirillaNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Spirochaetaceae

Genus

Sediminispirochaeta

Description

Sediminispirochaeta smaragdinae DSM 11293 is a nonsporulating, anaerobic bacterium characterized by its spirilla shape and its role as a chemoorganotroph, utilizing organic compounds as an energy source. This microbe thrives in specialized habitats, which likely reflect its adaptation to specific environmental conditions that may not be conducive to other microbial life forms. The anaerobic nature of S. smaragdinae suggests a metabolic process that is independent of oxygen, potentially involving fermentation or anaerobic respiration to sustain its energy needs. Its spirilla morphology may confer advantages in motility and colonization within its specialized habitat, allowing for effective navigation through complex environments, such as sediment layers or anaerobic niches. The ecological implications of S. smaragdinae's lifestyle highlight the importance of anaerobic microorganisms in biogeochemical cycles, particularly in the decomposition of organic matter, which contributes to nutrient cycling in its environment. This positions S. smaragdinae as a potential player in the maintenance of anaerobic ecosystems, emphasizing the critical roles that such specialized microbes hold in sustaining ecological balance and facilitating energy flow within their habitats.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilySpirochaetaceae
GenusSediminispirochaeta
SpeciesSediminispirochaeta smaragdinae
StrainDSM 11293

Profile

Physiology
Gram staining propertiesNot Available
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sediminispirochaeta smaragdinae DSM 11293
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Sediminispirochaeta smaragdinae DSM 11293, complete sequence.

Gene Summary

Adenine Count

1191501 bp

Thymine Count

1183646 bp

Guanine Count

1138528 bp

Cytosine Count

1140295 bp

Genome Length

4653970 bp

Protein-coding Genes

4268 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sensor histidine kinaseSPIRS_RS17275Not AvailableNegative3682956 - 368439555426.8
abc transporter substrate-binding proteinSPIRS_RS17280Not AvailableNegative3684397 - 368541036803.9
type ii toxin-antitoxin system vapc family toxinSPIRS_RS17285Not AvailableNegative3685867 - 368627415911.1
type ii toxin-antitoxin system phd/yefm family antitoxinSPIRS_RS17290Not AvailableNegative3686271 - 36865079133.15
sn-glycerol-1-phosphate dehydrogenaseSPIRS_RS17295Not AvailablePositive3686759 - 368812049690.9
laci family dna-binding transcriptional regulatorSPIRS_RS17300Not AvailablePositive3688202 - 368922738670.6
ribulokinaseSPIRS_RS17305Not AvailablePositive3689260 - 369093960837.4
l-ribulose-5-phosphate 4-epimerase aradSPIRS_RS17310Not AvailablePositive3690952 - 369164725783.6
l-arabinose isomeraseSPIRS_RS17315Not AvailablePositive3691670 - 369318455783.6
crp/fnr family transcriptional regulatorSPIRS_RS17320Not AvailableNegative3693314 - 369399425606.1

Displaying genes 3471 – 3480 of 4359 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.