Sediminispirochaeta smaragdinae DSM 11293

SpirillaNon-motileAnaerobic

Kingdom

Pseudomonadati

Phylum

Spirochaetota

Class

Spirochaetia

Order

Spirochaetales

Family

Spirochaetaceae

Genus

Sediminispirochaeta

Description

Sediminispirochaeta smaragdinae DSM 11293 is a nonsporulating, anaerobic bacterium characterized by its spirilla shape and its role as a chemoorganotroph, utilizing organic compounds as an energy source. This microbe thrives in specialized habitats, which likely reflect its adaptation to specific environmental conditions that may not be conducive to other microbial life forms. The anaerobic nature of S. smaragdinae suggests a metabolic process that is independent of oxygen, potentially involving fermentation or anaerobic respiration to sustain its energy needs. Its spirilla morphology may confer advantages in motility and colonization within its specialized habitat, allowing for effective navigation through complex environments, such as sediment layers or anaerobic niches. The ecological implications of S. smaragdinae's lifestyle highlight the importance of anaerobic microorganisms in biogeochemical cycles, particularly in the decomposition of organic matter, which contributes to nutrient cycling in its environment. This positions S. smaragdinae as a potential player in the maintenance of anaerobic ecosystems, emphasizing the critical roles that such specialized microbes hold in sustaining ecological balance and facilitating energy flow within their habitats.

Taxonomy

KingdomPseudomonadati
PhylumSpirochaetota
ClassSpirochaetia
OrderSpirochaetales
FamilySpirochaetaceae
GenusSediminispirochaeta
SpeciesSediminispirochaeta smaragdinae
StrainDSM 11293

Profile

Physiology
Gram staining propertiesNot Available
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Sediminispirochaeta smaragdinae DSM 11293
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Sediminispirochaeta smaragdinae DSM 11293, complete sequence.

Gene Summary

Adenine Count

1191501 bp

Thymine Count

1183646 bp

Guanine Count

1138528 bp

Cytosine Count

1140295 bp

Genome Length

4653970 bp

Protein-coding Genes

4268 genes

Non-Coding Genes

91 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
double zinc ribbon domain-containing proteinSPIRS_RS07565Not AvailablePositive1610155 - 161047511556.1
dna/rna nuclease sfsaSPIRS_RS07570Not AvailableNegative1610463 - 161123628500.5
amp-dependent synthetase/ligaseSPIRS_RS07575Not AvailableNegative1611211 - 161311570821.5
protein-disulfide reductase dsbd family proteinSPIRS_RS07580Not AvailableNegative1613152 - 161493664864.9
tlpa disulfide reductase family proteinSPIRS_RS07585Not AvailableNegative1614952 - 161553621096.5
cpbp family intramembrane glutamic endopeptidaseSPIRS_RS07590Not AvailableNegative1615586 - 161628426107.4
flagellar brake proteinSPIRS_RS07595Not AvailablePositive1616354 - 161740639899.6
hypothetical proteinSPIRS_RS07600Not AvailablePositive1617421 - 161863844465.0
comec/rec2 family competence proteinSPIRS_RS22575Not AvailablePositive1618901 - 162022047638.2
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaSPIRS_RS07605Not AvailablePositive1620150 - 162095929387.8

Displaying genes 1581 – 1590 of 4359 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.