Chitinophaga rupis

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga rupis is a Gram-negative, rod-shaped bacterium that exhibits aerobic metabolic characteristics. This organism belongs to the phylum Bacteroidetes and is notable for its ability to thrive in oxygen-rich environments. The Gram-negative nature of C. rupis indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane, which is typical for this group of bacteria and may confer specific advantages in its ecological niche. The rod shape of C. rupis is a common morphology among many bacteria, which can influence its motility and interaction with its environment. As an aerobic microbe, C. rupis relies on oxygen for its metabolic processes, which may play a critical role in its ecological adaptations. This trait suggests that C. rupis may be involved in specific biogeochemical cycles where oxygen availability is a determining factor. Interestingly, the presence of C. rupis in various environments may indicate its role in the degradation of chitin, a biopolymer found in the exoskeletons of arthropods and in fungal cell walls. This ability to degrade chitin could have significant implications for nutrient cycling in ecosystems, particularly in soil and marine environments where chitinous materials are abundant. Thus, C. rupis may contribute to the decomposition of organic matter and the recycling of nutrients in its habitat, highlighting its ecological significance in maintaining ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga rupis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga rupis strain DSM 21039 genome assembly, contig:

Gene Summary

Adenine Count

2199289 bp

Thymine Count

2199880 bp

Guanine Count

1998172 bp

Cytosine Count

1989318 bp

Genome Length

8387119 bp

Protein-coding Genes

6501 genes

Non-Coding Genes

64 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nucleoside-diphosphate-sugar epimeraseSAMN04488505_109156Not AvailablePositive6843052 - 684398433991.8
cystathionine beta-lyaseSAMN04488505_109158Not AvailablePositive6844880 - 684606442349.9
imidazolonepropionaseSAMN04488505_109159Not AvailablePositive6846061 - 684740448779.8
na+/h+-dicarboxylate symporterSAMN04488505_109160Not AvailableNegative6847448 - 684868943892.3
lysophospholipase l1SAMN04488505_109161Not AvailablePositive6848788 - 684956128084.6
hypothetical proteinSAMN04488505_109162Not AvailablePositive6849651 - 685032826104.7
cobalt-zinc-cadmium resistance protein czcaSAMN04488505_109163Not AvailablePositive6850422 - 6854831161072.0
membrane fusion protein, cobalt-zinc-cadmium efflux systemSAMN04488505_109164Not AvailablePositive6854833 - 685597242433.9
haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or edSAMN04488505_109165Not AvailablePositive6856071 - 685669723190.8
adp-ribose pyrophosphatase yjhb, nudix familySAMN04488505_109166Not AvailablePositive6856995 - 685769927120.2

Displaying genes 5391 – 5400 of 6565 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.